chore: release 2024-09-25--21-50-30Z

Updated datasets: - SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs) - SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins) - SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2) - SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB) - SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
nextstrain · Sep 25, 2024 · 0812396 · 0812396
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diff --git a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md b/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/data_output/index.json b/data_output/index.json
@@ -93,7 +93,8 @@
           },
           "versions": [
             {
-              "tag": "unreleased",
+              "updatedAt": "2024-09-25T21:50:30Z",
+              "tag": "2024-09-25--21-50-30Z",
               "compatibility": {
                 "cli": "3.0.0-alpha.0",
                 "web": "3.0.0-alpha.0"
@@ -157,7 +158,8 @@
             }
           ],
           "version": {
-            "tag": "unreleased",
+            "updatedAt": "2024-09-25T21:50:30Z",
+            "tag": "2024-09-25--21-50-30Z",
             "compatibility": {
               "cli": "3.0.0-alpha.0",
               "web": "3.0.0-alpha.0"
@@ -228,7 +230,8 @@
           },
           "versions": [
             {
-              "tag": "unreleased",
+              "updatedAt": "2024-09-25T21:50:30Z",
+              "tag": "2024-09-25--21-50-30Z",
               "compatibility": {
                 "cli": "3.0.0-alpha.0",
                 "web": "3.0.0-alpha.0"
@@ -292,7 +295,8 @@
             }
           ],
           "version": {
-            "tag": "unreleased",
+            "updatedAt": "2024-09-25T21:50:30Z",
+            "tag": "2024-09-25--21-50-30Z",
             "compatibility": {
               "cli": "3.0.0-alpha.0",
               "web": "3.0.0-alpha.0"
@@ -366,7 +370,8 @@
           },
           "versions": [
             {
-              "tag": "unreleased",
+              "updatedAt": "2024-09-25T21:50:30Z",
+              "tag": "2024-09-25--21-50-30Z",
               "compatibility": {
                 "cli": "3.0.0-alpha.0",
                 "web": "3.0.0-alpha.0"
@@ -430,7 +435,8 @@
             }
           ],
           "version": {
-            "tag": "unreleased",
+            "updatedAt": "2024-09-25T21:50:30Z",
+            "tag": "2024-09-25--21-50-30Z",
             "compatibility": {
               "cli": "3.0.0-alpha.0",
               "web": "3.0.0-alpha.0"
@@ -501,7 +507,8 @@
           },
           "versions": [
             {
-              "tag": "unreleased",
+              "updatedAt": "2024-09-25T21:50:30Z",
+              "tag": "2024-09-25--21-50-30Z",
               "compatibility": {
                 "cli": "3.0.0-alpha.0",
                 "web": "3.0.0-alpha.0"
@@ -565,7 +572,8 @@
             }
           ],
           "version": {
-            "tag": "unreleased",
+            "updatedAt": "2024-09-25T21:50:30Z",
+            "tag": "2024-09-25--21-50-30Z",
             "compatibility": {
               "cli": "3.0.0-alpha.0",
               "web": "3.0.0-alpha.0"
@@ -636,7 +644,8 @@
           },
           "versions": [
             {
-              "tag": "unreleased",
+              "updatedAt": "2024-09-25T21:50:30Z",
+              "tag": "2024-09-25--21-50-30Z",
               "compatibility": {
                 "cli": "3.0.0-alpha.0",
                 "web": "3.0.0-alpha.0"
@@ -700,7 +709,8 @@
             }
           ],
           "version": {
-            "tag": "unreleased",
+            "updatedAt": "2024-09-25T21:50:30Z",
+            "tag": "2024-09-25--21-50-30Z",
             "compatibility": {
               "cli": "3.0.0-alpha.0",
               "web": "3.0.0-alpha.0"

diff --git a/...ars-cov-2/BA.2.86/unreleased/CHANGELOG.md → ...A.2.86/2024-09-25--21-50-30Z/CHANGELOG.md b/...ars-cov-2/BA.2.86/unreleased/CHANGELOG.md → ...A.2.86/2024-09-25--21-50-30Z/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/...n/sars-cov-2/BA.2.86/unreleased/README.md → ...2/BA.2.86/2024-09-25--21-50-30Z/README.md b/...n/sars-cov-2/BA.2.86/unreleased/README.md → ...2/BA.2.86/2024-09-25--21-50-30Z/README.md
diff --git a/...sars-cov-2/BA.2.86/unreleased/dataset.zip → ...BA.2.86/2024-09-25--21-50-30Z/dataset.zip b/...sars-cov-2/BA.2.86/unreleased/dataset.zip → ...BA.2.86/2024-09-25--21-50-30Z/dataset.zip
diff --git a/...BA.2.86/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3 b/...BA.2.86/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3
diff --git a/...rs-cov-2/BA.2.86/unreleased/pathogen.json → ....2.86/2024-09-25--21-50-30Z/pathogen.json b/...rs-cov-2/BA.2.86/unreleased/pathogen.json → ....2.86/2024-09-25--21-50-30Z/pathogen.json
@@ -2690,7 +2690,8 @@
   },
   "schemaVersion": "3.0.0",
   "version": {
-    "tag": "unreleased",
+    "updatedAt": "2024-09-25T21:50:30Z",
+    "tag": "2024-09-25--21-50-30Z",
     "compatibility": {
       "cli": "3.0.0-alpha.0",
       "web": "3.0.0-alpha.0"

diff --git a/...-cov-2/BA.2.86/unreleased/reference.fasta → ....86/2024-09-25--21-50-30Z/reference.fasta b/...-cov-2/BA.2.86/unreleased/reference.fasta → ....86/2024-09-25--21-50-30Z/reference.fasta
diff --git a/...-cov-2/BA.2.86/unreleased/sequences.fasta → ....86/2024-09-25--21-50-30Z/sequences.fasta b/...-cov-2/BA.2.86/unreleased/sequences.fasta → ....86/2024-09-25--21-50-30Z/sequences.fasta
diff --git a/...n/sars-cov-2/BA.2.86/unreleased/tree.json → ...2/BA.2.86/2024-09-25--21-50-30Z/tree.json b/...n/sars-cov-2/BA.2.86/unreleased/tree.json → ...2/BA.2.86/2024-09-25--21-50-30Z/tree.json
diff --git a/...n/sars-cov-2/BA.2/unreleased/CHANGELOG.md → ...2/BA.2/2024-09-25--21-50-30Z/CHANGELOG.md b/...n/sars-cov-2/BA.2/unreleased/CHANGELOG.md → ...2/BA.2/2024-09-25--21-50-30Z/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/...rain/sars-cov-2/BA.2/unreleased/README.md → ...ov-2/BA.2/2024-09-25--21-50-30Z/README.md b/...rain/sars-cov-2/BA.2/unreleased/README.md → ...ov-2/BA.2/2024-09-25--21-50-30Z/README.md
diff --git a/...in/sars-cov-2/BA.2/unreleased/dataset.zip → ...-2/BA.2/2024-09-25--21-50-30Z/dataset.zip b/...in/sars-cov-2/BA.2/unreleased/dataset.zip → ...-2/BA.2/2024-09-25--21-50-30Z/dataset.zip
diff --git a/...-2/BA.2/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3 b/...-2/BA.2/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3
diff --git a/.../sars-cov-2/BA.2/unreleased/pathogen.json → .../BA.2/2024-09-25--21-50-30Z/pathogen.json b/.../sars-cov-2/BA.2/unreleased/pathogen.json → .../BA.2/2024-09-25--21-50-30Z/pathogen.json
@@ -2690,7 +2690,8 @@
   },
   "schemaVersion": "3.0.0",
   "version": {
-    "tag": "unreleased",
+    "updatedAt": "2024-09-25T21:50:30Z",
+    "tag": "2024-09-25--21-50-30Z",
     "compatibility": {
       "cli": "3.0.0-alpha.0",
       "web": "3.0.0-alpha.0"

diff --git a/...ars-cov-2/BA.2/unreleased/reference.fasta → ...A.2/2024-09-25--21-50-30Z/reference.fasta b/...ars-cov-2/BA.2/unreleased/reference.fasta → ...A.2/2024-09-25--21-50-30Z/reference.fasta
diff --git a/...ars-cov-2/BA.2/unreleased/sequences.fasta → ...A.2/2024-09-25--21-50-30Z/sequences.fasta b/...ars-cov-2/BA.2/unreleased/sequences.fasta → ...A.2/2024-09-25--21-50-30Z/sequences.fasta
diff --git a/...rain/sars-cov-2/BA.2/unreleased/tree.json → ...ov-2/BA.2/2024-09-25--21-50-30Z/tree.json b/...rain/sars-cov-2/BA.2/unreleased/tree.json → ...ov-2/BA.2/2024-09-25--21-50-30Z/tree.json
diff --git a/...in/sars-cov-2/XBB/unreleased/CHANGELOG.md → ...-2/XBB/2024-09-25--21-50-30Z/CHANGELOG.md b/...in/sars-cov-2/XBB/unreleased/CHANGELOG.md → ...-2/XBB/2024-09-25--21-50-30Z/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/...train/sars-cov-2/XBB/unreleased/README.md → ...cov-2/XBB/2024-09-25--21-50-30Z/README.md b/...train/sars-cov-2/XBB/unreleased/README.md → ...cov-2/XBB/2024-09-25--21-50-30Z/README.md
diff --git a/...ain/sars-cov-2/XBB/unreleased/dataset.zip → ...v-2/XBB/2024-09-25--21-50-30Z/dataset.zip b/...ain/sars-cov-2/XBB/unreleased/dataset.zip → ...v-2/XBB/2024-09-25--21-50-30Z/dataset.zip
diff --git a/...v-2/XBB/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3 b/...v-2/XBB/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3
diff --git a/...n/sars-cov-2/XBB/unreleased/pathogen.json → ...2/XBB/2024-09-25--21-50-30Z/pathogen.json b/...n/sars-cov-2/XBB/unreleased/pathogen.json → ...2/XBB/2024-09-25--21-50-30Z/pathogen.json
@@ -2690,7 +2690,8 @@
   },
   "schemaVersion": "3.0.0",
   "version": {
-    "tag": "unreleased",
+    "updatedAt": "2024-09-25T21:50:30Z",
+    "tag": "2024-09-25--21-50-30Z",
     "compatibility": {
       "cli": "3.0.0-alpha.0",
       "web": "3.0.0-alpha.0"

diff --git a/...sars-cov-2/XBB/unreleased/reference.fasta → ...XBB/2024-09-25--21-50-30Z/reference.fasta b/...sars-cov-2/XBB/unreleased/reference.fasta → ...XBB/2024-09-25--21-50-30Z/reference.fasta
diff --git a/...sars-cov-2/XBB/unreleased/sequences.fasta → ...XBB/2024-09-25--21-50-30Z/sequences.fasta b/...sars-cov-2/XBB/unreleased/sequences.fasta → ...XBB/2024-09-25--21-50-30Z/sequences.fasta
diff --git a/...train/sars-cov-2/XBB/unreleased/tree.json → ...cov-2/XBB/2024-09-25--21-50-30Z/tree.json b/...train/sars-cov-2/XBB/unreleased/tree.json → ...cov-2/XBB/2024-09-25--21-50-30Z/tree.json
diff --git a/...2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md → ...1/orfs/2024-09-25--21-50-30Z/CHANGELOG.md b/...2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md → ...1/orfs/2024-09-25--21-50-30Z/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/...ov-2/wuhan-hu-1/orfs/unreleased/README.md → ...hu-1/orfs/2024-09-25--21-50-30Z/README.md b/...ov-2/wuhan-hu-1/orfs/unreleased/README.md → ...hu-1/orfs/2024-09-25--21-50-30Z/README.md
diff --git a/...-2/wuhan-hu-1/orfs/unreleased/dataset.zip → ...-1/orfs/2024-09-25--21-50-30Z/dataset.zip b/...-2/wuhan-hu-1/orfs/unreleased/dataset.zip → ...-1/orfs/2024-09-25--21-50-30Z/dataset.zip
diff --git a/...-1/orfs/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3 b/...-1/orfs/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3
diff --git a/.../wuhan-hu-1/orfs/unreleased/pathogen.json → .../orfs/2024-09-25--21-50-30Z/pathogen.json b/.../wuhan-hu-1/orfs/unreleased/pathogen.json → .../orfs/2024-09-25--21-50-30Z/pathogen.json
@@ -2690,7 +2690,8 @@
   },
   "schemaVersion": "3.0.0",
   "version": {
-    "tag": "unreleased",
+    "updatedAt": "2024-09-25T21:50:30Z",
+    "tag": "2024-09-25--21-50-30Z",
     "compatibility": {
       "cli": "3.0.0-alpha.0",
       "web": "3.0.0-alpha.0"

diff --git a/...uhan-hu-1/orfs/unreleased/reference.fasta → ...rfs/2024-09-25--21-50-30Z/reference.fasta b/...uhan-hu-1/orfs/unreleased/reference.fasta → ...rfs/2024-09-25--21-50-30Z/reference.fasta
diff --git a/...uhan-hu-1/orfs/unreleased/sequences.fasta → ...rfs/2024-09-25--21-50-30Z/sequences.fasta b/...uhan-hu-1/orfs/unreleased/sequences.fasta → ...rfs/2024-09-25--21-50-30Z/sequences.fasta
diff --git a/...ov-2/wuhan-hu-1/orfs/unreleased/tree.json → ...hu-1/orfs/2024-09-25--21-50-30Z/tree.json b/...ov-2/wuhan-hu-1/orfs/unreleased/tree.json → ...hu-1/orfs/2024-09-25--21-50-30Z/tree.json
diff --git a/...han-hu-1/proteins/unreleased/CHANGELOG.md → ...oteins/2024-09-25--21-50-30Z/CHANGELOG.md b/...han-hu-1/proteins/unreleased/CHANGELOG.md → ...oteins/2024-09-25--21-50-30Z/CHANGELOG.md
@@ -1,4 +1,4 @@
-## Unreleased
+## 2024-09-25T21:50:30Z
 
 - Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
 - All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates

diff --git a/.../wuhan-hu-1/proteins/unreleased/README.md → .../proteins/2024-09-25--21-50-30Z/README.md b/.../wuhan-hu-1/proteins/unreleased/README.md → .../proteins/2024-09-25--21-50-30Z/README.md
diff --git a/...uhan-hu-1/proteins/unreleased/dataset.zip → ...roteins/2024-09-25--21-50-30Z/dataset.zip b/...uhan-hu-1/proteins/unreleased/dataset.zip → ...roteins/2024-09-25--21-50-30Z/dataset.zip
diff --git a/...roteins/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3 b/...roteins/unreleased/genome_annotation.gff3 → ...4-09-25--21-50-30Z/genome_annotation.gff3
diff --git a/...an-hu-1/proteins/unreleased/pathogen.json → ...teins/2024-09-25--21-50-30Z/pathogen.json b/...an-hu-1/proteins/unreleased/pathogen.json → ...teins/2024-09-25--21-50-30Z/pathogen.json
@@ -2690,7 +2690,8 @@
   },
   "schemaVersion": "3.0.0",
   "version": {
-    "tag": "unreleased",
+    "updatedAt": "2024-09-25T21:50:30Z",
+    "tag": "2024-09-25--21-50-30Z",
     "compatibility": {
       "cli": "3.0.0-alpha.0",
       "web": "3.0.0-alpha.0"

diff --git a/...-hu-1/proteins/unreleased/reference.fasta → ...ins/2024-09-25--21-50-30Z/reference.fasta b/...-hu-1/proteins/unreleased/reference.fasta → ...ins/2024-09-25--21-50-30Z/reference.fasta
diff --git a/...-hu-1/proteins/unreleased/sequences.fasta → ...ins/2024-09-25--21-50-30Z/sequences.fasta b/...-hu-1/proteins/unreleased/sequences.fasta → ...ins/2024-09-25--21-50-30Z/sequences.fasta
diff --git a/.../wuhan-hu-1/proteins/unreleased/tree.json → .../proteins/2024-09-25--21-50-30Z/tree.json b/.../wuhan-hu-1/proteins/unreleased/tree.json → .../proteins/2024-09-25--21-50-30Z/tree.json