Fix broken links [#1133] #1137
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Fix broken links [#1133] #1137
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Note: this contains 2 URLs in the `linkcheck_ignore` section that need to be fixed; each has an associated FIXME comment linking to a Github issue. I'm ignoring those temporarily so that after this PR is merged, `make linkcheck` will exit without error in this repo, which will unblock activating linkchecking in _all_ the CI doc builds.
…1133] The linkchecker doesn't recognize the text fragment thing as a real anchor, so just exclude that from the full anchor check.
Known-good URL is failing for technical reasons related to how nextstrain.org handles routing datasets without a default. [Slack context](https://bedfordlab.slack.com/archives/C0K3GS3J8/p1723571470133649)
GISAID is returning 301 on `www.gisaid.org` links, so let's respect it and update our URLs. Also correct some URLs to where they ultimately redirect.
* switch `tree` to `blob`, because they 301 that way * swap `master` for `-`, for future-proofing
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Description of proposed changes
Adds linkchecking config, fixes almost all the broken links, and temporarily ignores 2 internal URLs where I need further guidance on the correct fix.
Related issue(s)
Closes #1133
#1135
#1136
nextstrain/.github#29