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Add new emerging lineages #1085

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Oct 1, 2023
Merged

Add new emerging lineages #1085

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4260cd0
Add new emerging lineages
corneliusroemer Oct 1, 2023
cfa0682
Add new emerging lineages to color ordering
corneliusroemer Oct 1, 2023
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9 changes: 8 additions & 1 deletion defaults/color_ordering.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -34046,9 +34046,16 @@ emerging_lineage XBC
emerging_lineage XBB.1.9.1
emerging_lineage XBB.1.42
emerging_lineage XBB.1.22.1
emerging_lineage XBB.1.19
emerging_lineage XBB.1.17.1
emerging_lineage FE.1
emerging_lineage FL.1.5.1
emerging_lineage XBB.1.5.70
emerging_lineage XBB.1.16.6
emerging_lineage DV.7.1
emerging_lineage HV.1
emerging_lineage HK.3
emerging_lineage BA.2.86
emerging_lienage GW.5

################

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46 changes: 41 additions & 5 deletions defaults/emerging_lineages.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -260,8 +260,44 @@ XBB.1.17.1 nuc 22205 C
XBB.1.17.1 nuc 23018 C
XBB.1.17.1 nuc 27995 C

XBB.1.19 clade 22F
XBB.1.19 nuc 10042 G
XBB.1.19 nuc 21363 T
XBB.1.19 nuc 23018 C
XBB.1.19 nuc 27915 G
FL.1.5.1 clade XBB.1.9.1
FL.1.5.1 nuc 3242 A
FL.1.5.1 nuc 20060 T
FL.1.5.1 nuc 22995 G

XBB.1.5.70 clade 23A
XBB.1.5.70 nuc 8737 C
XBB.1.5.70 nuc 25045 G
XBB.1.5.70 nuc 28005 T

XBB.1.16.6 clade 23B
XBB.1.16.6 nuc 12397 G
XBB.1.16.6 nuc 8947 T
XBB.1.16.6 nuc 22930 A

DV.7.1 clade 23C
DV.7.1 nuc 4036 A
DV.7.1 nuc 22927 T
DV.7.1 nuc 22928 C

HV.1 clade 23F
HV.1 nuc 5835 T
HV.1 nuc 22033 A
HV.1 nuc 22917 G

HK.3 clade 23F
HK.3 nuc 13627 A
HK.3 nuc 22927 T

BA.2.86 clade 21L
BA.2.86 nuc 15756 A
BA.2.86 nuc 897 A
BA.2.86 nuc 28958 A

GW.5 clade 22F
GW.5 nuc 1170 T
GW.5 nuc 6501 A
GW.5 nuc 10042 G
GW.5 nuc 21363 T
GW.5 nuc 27915 G

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