Apply clade recency to open and 21L builds

nextstrain · Sep 30, 2024 · d517a5f · d517a5f
1 parent 2bf39d3
commit d517a5f
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diff --git a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
@@ -886,6 +886,54 @@ subsampling:
 refine:
   root: "21L"
 
+# if different traits should be reconstructed for some builds, specify here
+# otherwise the default trait config in defaults/parameters.yaml will used
+colors:
+  default:
+    clade_recency: "all"
+  global_1m:
+    clade_recency: "1M"
+  global_2m:
+    clade_recency: "2M"
+  global_6m:
+    clade_recency: "6M"
+  africa_1m:
+    clade_recency: "1M"
+  africa_2m:
+    clade_recency: "2M"
+  africa_6m:
+    clade_recency: "6M"
+  asia_1m:
+    clade_recency: "1M"
+  asia_2m:
+    clade_recency: "2M"
+  asia_6m:
+    clade_recency: "6M"
+  europe_1m:
+    clade_recency: "1M"
+  europe_2m:
+    clade_recency: "2M"
+  europe_6m:
+    clade_recency: "6M"
+  north-america_1m:
+    clade_recency: "1M"
+  north-america_2m:
+    clade_recency: "2M"
+  north-america_6m:
+    clade_recency: "6M"
+  oceania_1m:
+    clade_recency: "1M"
+  oceania_2m:
+    clade_recency: "2M"
+  oceania_6m:
+    clade_recency: "6M"
+  south-america_1m:
+    clade_recency: "1M"
+  south-america_2m:
+    clade_recency: "2M"
+  south-america_6m:
+    clade_recency: "6M"
+
 # if different traits should be reconstructed for some builds, specify here
 # otherwise the default trait config in defaults/parameters.yaml will used
 traits:

diff --git a/nextstrain_profiles/nextstrain-open/builds.yaml b/nextstrain_profiles/nextstrain-open/builds.yaml
@@ -799,6 +799,54 @@ subsampling:
 refine:
   root: "Wuhan-Hu-1/2019"
 
+# if different traits should be reconstructed for some builds, specify here
+# otherwise the default trait config in defaults/parameters.yaml will used
+colors:
+  default:
+    clade_recency: "all"
+  global_1m:
+    clade_recency: "1M"
+  global_2m:
+    clade_recency: "2M"
+  global_6m:
+    clade_recency: "6M"
+  africa_1m:
+    clade_recency: "1M"
+  africa_2m:
+    clade_recency: "2M"
+  africa_6m:
+    clade_recency: "6M"
+  asia_1m:
+    clade_recency: "1M"
+  asia_2m:
+    clade_recency: "2M"
+  asia_6m:
+    clade_recency: "6M"
+  europe_1m:
+    clade_recency: "1M"
+  europe_2m:
+    clade_recency: "2M"
+  europe_6m:
+    clade_recency: "6M"
+  north-america_1m:
+    clade_recency: "1M"
+  north-america_2m:
+    clade_recency: "2M"
+  north-america_6m:
+    clade_recency: "6M"
+  oceania_1m:
+    clade_recency: "1M"
+  oceania_2m:
+    clade_recency: "2M"
+  oceania_6m:
+    clade_recency: "6M"
+  south-america_1m:
+    clade_recency: "1M"
+  south-america_2m:
+    clade_recency: "2M"
+  south-america_6m:
+    clade_recency: "6M"
+
 # if different traits should be reconstructed for some builds, specify here
 # otherwise the default trait config in defaults/parameters.yaml will used
 traits: