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feat: treat CDS as a valid feature for GFFs in load_features #1332

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corneliusroemer
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We currently don't load CDS features from GFF files
Within Nextclade, we now treat CDS as the translatable unit, not gene
So to use Nextclade GFF annotations in ancestral, we need to be able to read in CDS features

Reading in CDS in addition to gene and source could potentially break some workflows that use gffs that have both gene and CDS features

We currently don't load CDS features from GFF files
Within Nextclade, we now treat CDS as the translatable unit, not gene
So to use Nextclade GFF annotations in ancestral, we need to be able to read in CDS features

Reading in CDS in addition to gene and source could potentially break some workflows that use gffs that have both gene and CDS features
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codecov bot commented Nov 4, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Files Coverage Δ
augur/utils.py 71.36% <100.00%> (ø)

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@victorlin
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Is this still desired? I noticed region was added in afa8bd6.

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