Workflow output definition (second preview) #5185
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Signed-off-by: Ben Sherman <[email protected]>
✅ Deploy Preview for nextflow-docs-staging ready!
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Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
bentsherman
changed the title
bentsherman
requested review from
pditommaso
and removed request for
a team
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Second preview is ready for review, POCs have also been updated: |
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
maxulysse
reviewed
Oct 3, 2024
| output { | ||
| 'fastq' { | ||
| path { meta, fastq_1, fastq_2 -> | ||
| { file -> "fastq/${meta.id}/${file.baseName}" } |
Signed-off-by: Ben Sherman <[email protected]>
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I just tried the dynamic publishing with some dummy code and it worked perfectly! I'm looking forward to implementing this in my pipelines 🥳 |
pditommaso
reviewed
Oct 17, 2024
Comment on lines
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| void contentType(String value) { | ||
| setDefault('contentType', value) | ||
| } | ||
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| void contentType(boolean value) { | ||
| setDefault('contentType', value) | ||
| } | ||
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| void ignoreErrors(boolean value) { | ||
| setDefault('ignoreErrors', value) | ||
| } | ||
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| void mode(String value) { | ||
| setDefault('mode', value) | ||
| } | ||
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| void overwrite(boolean value) { | ||
| setDefault('overwrite', value) | ||
| } | ||
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| void overwrite(String value) { | ||
| setDefault('overwrite', value) | ||
| } | ||
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| void storageClass(String value) { | ||
| setDefault('storageClass', value) | ||
| } | ||
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| void tags(Map value) { | ||
| setDefault('tags', value) | ||
| } | ||
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| void enabled( boolean value ) { | ||
| setDefault('enabled', value) | ||
| } |
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Is it still possible to control these at target level?
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nice, and output top level? only in the config or config and script definition?
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only the config. default output directory is results
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Close #5103
TODO:
language improvements:
runtime improvements:
new features (might be handled separately):