initial version

.github/workflows/docker-publish.yml

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+name: Docker
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+on:
+  push:
+    tags: [ '*' ]
+
+env:
+  # Use docker.io for Docker Hub if empty
+  REGISTRY: ghcr.io
+  IMAGE_NAME: nexomis/kat
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+      # This is used to complete the identity challenge
+      # with sigstore/fulcio when running outside of PRs.
+      id-token: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      - name: Log into registry ${{ env.REGISTRY }}
+        if: github.event_name != 'pull_request'
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract Docker metadata
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          flavor: |
+            latest=false
+            prefix=
+            suffix=
+
+      - name: Build and push Docker image
+        id: build-and-push
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          platforms: linux/amd64
+          push: ${{ github.event_name != 'pull_request' }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: |
+            org.opencontainers.image.created=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.created'] }}
+            org.opencontainers.image.revision=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.revision'] }}
+            org.opencontainers.image.source=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.source'] }}
+            org.opencontainers.image.url=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.url'] }}
+            org.opencontainers.image.version=${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.version'] }}
+

Dockerfile

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+# Stage 1: Build environment
+FROM ubuntu:20.04 as builder
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Install build dependencies
+RUN apt-get update && apt-get install --no-install-recommends -y \
+    autoconf \
+    automake \
+    make \
+    gcc \
+    g++ \
+    libc6-dev \
+    libtool \
+    python3-dev \
+    zlib1g-dev \
+    wget \
+    python3-numpy \
+    python3-scipy \
+    python3-matplotlib \
+    python3-sphinx \
+    python3-distutils \
+    python3-setuptools \
+    ca-certificates \
+    && rm -rf /var/lib/apt/lists/* \
+    && mkdir -p /opt/kat \
+    && chmod o+rx /opt /opt/kat
+
+# Clone KAT repository
+WORKDIR /build
+RUN wget https://github.com/TGAC/KAT/archive/refs/tags/Release-2.4.1.tar.gz \
+  && tar xvzf Release-2.4.1.tar.gz 
+
+# Build KAT
+WORKDIR /build/KAT-Release-2.4.1
+RUN ./build_boost.sh
+RUN ./autogen.sh
+RUN ./configure --prefix /opt/kat
+RUN make
+RUN make install
+
+# Stage 2: Runtime environment
+FROM ubuntu:20.04
+
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Install runtime dependencies
+RUN apt-get update && apt-get install --no-install-recommends -y \
+    zlib1g \
+    python3 \
+    libpython3.8 \
+    libtool \
+    libc6 \
+    python3-numpy \
+    python3-scipy \
+    python3-matplotlib \
+    python3-sphinx \
+    python3-distutils \
+    python3-setuptools \
+    python3-tabulate \
+    && rm -rf /var/lib/apt/lists/* \
+    && mkdir -p /opt/kat \
+    && chmod o+rx /opt /opt/kat
+
+# Copy the built KAT binaries from the builder stage
+COPY --from=builder /opt/kat/bin /opt/kat/bin
+COPY --from=builder /opt/kat/lib /opt/kat/lib
+
+RUN ln -s /opt/kat/lib/python3.8/site-packages /usr/local/lib/python3.8/site-packages
+
+# Set the environment variable to find shared libraries
+ENV LD_LIBRARY_PATH=/opt/kat/lib:$LD_LIBRARY_PATH
+ENV PATH=/opt/kat/bin:$PATH
+
+# Define the default command to run KAT
+ENTRYPOINT ["/opt/kat/bin/kat"]