summary output

[jis2008]

It would be nice to have a summary output file, similar like picard summary file where overall sequence error rate for 6 (or 12) types of base-change. That would be helpful for users without further process tasmania output through tableau (when they don't have it).

[aerijman]

@jis2008, I wrote the script jianscript.py that you Can find in the branch jianscript. you run it:
python jianscript.py Tasmanian_table.tsv

[bwlang]

i think @jis2008 was suggesting that you add an additional e.g. --summary-output option to the tool so it can produce such output natively.

[bwlang]

probably not worth much effort, but if it's easy...

[aerijman]

Sure!
We can develop the output with this script and once @jis2008 gives green flag we add it to Tasmanian?
BTW I added the improved version of the script with an output more similar to Picard