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@nebiolabs

New England Biolabs Inc.

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  1. plate-map plate-map Public

    A flexible tool for defining the contents of 96 well plates.

    JavaScript 47 13

  2. EM-seq EM-seq Public

    Tools and Data related to Enzymatic Methylation Sequencing

    Nextflow 16 5

  3. ampseer ampseer Public

    Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate betwe…

    Rust 14 1

  4. VarSkip VarSkip Public

    VarSkip multiplex PCR designs for SARS-CoV-2 sequencing

    13 9

  5. domainator domainator Public

    A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.

    Python 13 1

  6. nebnext-single-cell-rna-seq nebnext-single-cell-rna-seq Public

    Adapter trimming directions for NEBNext Single Cell/Low Input RNA Library Prep Kit for Illumina

    4 2

Repositories

Showing 10 of 56 repositories
  • low_bismap_methyl_calls Public

    Tools to assess called methylation in low mappability regions (as defined by bismap). Aligner MapQ does not always align with low mappability

    nebiolabs/low_bismap_methyl_calls’s past year of commit activity
    TeX 0 AGPL-3.0 0 4 0 Updated Oct 1, 2024
  • wps-ss-generator Public

    This is an attempt to streamline 96 well assembly / combination of ONT WPS submissions to the Sequencing Core

    nebiolabs/wps-ss-generator’s past year of commit activity
    JavaScript 1 0 0 0 Updated Sep 30, 2024
  • primer_monitor Public

    a service to allow people to register primers to be monitored for intersecting variants and be notified if new variants arise

    nebiolabs/primer_monitor’s past year of commit activity
    Ruby 3 AGPL-3.0 3 3 8 Updated Sep 27, 2024
  • tasmanian-mismatch Public

    Analysis of artifacts in high throughput sequencing data from genomic DNA.

    nebiolabs/tasmanian-mismatch’s past year of commit activity
    HTML 1 0 7 3 Updated Sep 25, 2024
  • domainator Public

    A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.

    nebiolabs/domainator’s past year of commit activity
    Python 13 1 14 0 Updated Sep 10, 2024
  • EM-seq Public

    Tools and Data related to Enzymatic Methylation Sequencing

    nebiolabs/EM-seq’s past year of commit activity
    Nextflow 16 AGPL-3.0 5 5 0 Updated Sep 4, 2024
  • domainator_examples Public

    Advanced examples of how to use the Domainator bioinformatics software suite

    nebiolabs/domainator_examples’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 1, 2024
  • iwc Public Forked from galaxyproject/iwc

    Intergalactic Workflow Commission

    nebiolabs/iwc’s past year of commit activity
    Python 0 61 0 0 Updated Jun 29, 2024
  • FFPE_nextflow_workflow Public

    Workflow to analyze FFPE ngs data

    nebiolabs/FFPE_nextflow_workflow’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 1 Updated Jun 28, 2024
  • plate-map Public

    A flexible tool for defining the contents of 96 well plates.

    nebiolabs/plate-map’s past year of commit activity
    JavaScript 47 AGPL-3.0 13 7 5 Updated Jun 20, 2024

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