Skip to content

Commit

Permalink
Add demo GIF for virtual slide digitization (video stitching)
Browse files Browse the repository at this point in the history
  • Loading branch information
jommarin committed Oct 2, 2024
1 parent 0de33ba commit d49cde1
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 0 deletions.
7 changes: 7 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -253,6 +253,13 @@ If you don't have access to GPU or appropriate hardware and don't want to instal

![DeepLIIF Website Demo](images/deepliif-website-demo-04.gif)

Our deployment at [deepliif.org](https://deepliif.org) also provides virtual slide digitization to generate a single stitched image from a 10x video acquired with a microscope and camera. The video should be captured with the following guidelines to achieve the best results:
* Brief but complete pauses at every section of the sample to avoid motion artifacts.
* Significant overlap between pauses so that there is sufficient context for stitching frames together.
* Methodical and consistent movement over the sample. For example, start at the top left corner, then go all the way to the right, then down one step, then all the way to the left, down one step, etc., until the end of the sample is reached. Again, brief overlapping pauses throughout will allow the best quality images to be generated.

![DeepLIIF Website Demo](images/deepliif-stitch-demo-01.gif)

## Cloud API Endpoints

DeepLIIF can also be accessed programmatically through an endpoint by posting a multipart-encoded request containing the original image file, along with optional parameters including postprocessing thresholds:
Expand Down
Binary file added images/deepliif-stitch-demo-01.gif
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit d49cde1

Please sign in to comment.