Update to work with the new schema

mskcc-omics-workflows · Sep 30, 2024 · 9ed92f7 · 9ed92f7
1 parent d4b4e95
commit 9ed92f7
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Showing 2 changed files with 27 additions and 30 deletions.
diff --git a/modules/msk/phylowgs/multievolve/environment.yml b/modules/msk/phylowgs/multievolve/environment.yml
@@ -1,9 +1,7 @@
 ---
-# yaml-language-server: $schema=https://raw.githubusercontent.com/mskcc-omics-workflows/modules/refs/heads/main/modules/environment-schema.json
-name: "phylowgs_multievolve"
 channels:
   - conda-forge
   - bioconda
   - defaults
 dependencies:
-  - "PHYLOWGS"
+  - "PHYLOWGS=NA"
diff --git a/modules/msk/phylowgs/multievolve/meta.yml b/modules/msk/phylowgs/multievolve/meta.yml
@@ -1,5 +1,4 @@
 ---
-# yaml-language-server: $schema=https://raw.githubusercontent.com/mskcc-omics-workflows/modules/refs/heads/main/modules/meta-schema.json
 name: "phylowgs_multievolve"
 description: Create trees from input from phylowgs_createinput
 keywords:
@@ -13,34 +12,34 @@ tools:
       tool_dev_url: "https://github.com/mskcc/phylowgs"
 
 input:
-  - meta:
-      type: map
-      description: |
-        Groovy Map containing sample information
-        e.g. `[ id:'sample1', single_end:false ]`
-  - cnv_data:
-      type: file
-      description: copy number input data from phylowgs_createinput
-      pattern: "*.{txt}"
-  - ssm_data:
-      type: file
-      description: mutation input data from phylowgs_createinput
-      pattern: "*.{txt}"
+  - - meta:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+    - cnv_data:
+        type: file
+        description: copy number input data from phylowgs_createinput
+        pattern: "*.{txt}"
+    - ssm_data:
+        type: file
+        description: mutation input data from phylowgs_createinput
+        pattern: "*.{txt}"
 
 output:
-  - meta:
-      type: map
-      description: |
-        Groovy Map containing sample information
-        e.g. `[ id:'sample1', single_end:false ]`
-  - trees:
-      type: file
-      description: Zip file containing the completed trees
-      pattern: "trees.zip"
-  - versions:
-      type: file
-      description: File containing software versions
-      pattern: "versions.yml"
+  - - meta:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1', single_end:false ]`
+  - - trees:
+        type: file
+        description: Zip file containing the completed trees
+        pattern: "trees.zip"
+  - - versions:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
 
 authors:
   - "@nikhil"