Update bcftools query (nf-core#3605)

* new module picard/scatterintervalsbyns * update annotsv to 3.3.6 * update installannotations * update output of bcftools query
mskcc-omics-workflows · Jul 18, 2023 · c9a36b6 · c9a36b6
1 parent af748a9
commit c9a36b6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/bcftools/query/main.nf b/modules/nf-core/bcftools/query/main.nf
@@ -34,7 +34,7 @@ process BCFTOOLS_QUERY {
         $samples_file \\
         $args \\
         $vcf \\
-        > ${prefix}.txt
+        > ${prefix}.${suffix}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":