Upgrade requirements.txt

requirements.txt

@@ -1,32 +1,41 @@
 alabaster==0.7.12
+antlr4-python3-runtime==4.9.3
 appdirs==1.4.4
 attrs==21.4.0
 Babel==2.9.1
 backports.entry-points-selectable==1.1.0
 beautifulsoup4==4.9.3
 bonobo==0.6.4
 certifi==2022.12.7
+CFGraph==0.2.1
 charset-normalizer==2.0.4
 click==8.1.2
 colorama==0.4.4
 commonmark==0.9.1
 decorator==5.1.1
 Deprecated==1.2.13
+deprecation==2.1.0
 distlib==0.3.2
 docutils==0.17.1
+EditorConfig==0.12.3
 filelock==3.0.12
 fs==2.4.13
+ghp-import==2.1.0
 graphviz==0.8.4
 greenlet==1.1.2
 hbreader==0.9.1
 idna==3.2
 imagesize==1.3.0
 importlib-metadata==4.11.3
+iniconfig==1.1.1
 isodate==0.6.0
 Jinja2==2.11.3
 joblib==1.1.1
+jsbeautifier==1.14.7
 json-flattener==0.1.9
+jsonasobj==1.3.1
 jsonasobj2==1.0.4
+jsonpath-ng==1.5.3
 jsonschema==4.4.0
 linkml-runtime==1.2.7
 MarkupSafe==2.0.1
@@ -36,29 +45,50 @@ numpy==1.22.0
 packaging==19.2
 pandas==1.3.5
 pandasql==0.7.3
+parse==1.19.0
 pbr==5.6.0
 pipenv==2022.12.19
 platformdirs==2.2.0
+ply==3.11
 prefixcommons==0.1.9
 psutil==5.8.0
+py==1.11.0
+pydantic==1.10.2
 Pygments==2.11.2
+PyJSG==0.11.10
+pymdown-extensions==9.7
 pyparsing==2.4.7
 pyrsistent==0.18.1
+PyShEx==0.8.1
+PyShExC==0.9.1
+pystow==0.4.6
+pytest==7.2.0
+pytest-logging==2015.11.4
 python-dateutil==2.8.2
 python-dotenv==0.19.0
 python-slugify==1.2.6
+PyTrie==0.4.0
 pytz==2021.1
 PyYAML==6.0.1
+pyyaml_env_tag==0.1
 rdflib==6.1.1
+rdflib-jsonld==0.6.1
+rdflib-shim==1.0.3
 recommonmark==0.7.1
 requests==2.31.0
+ruamel.yaml==0.17.21
+ruamel.yaml.clib==0.2.7
 scikit-learn==1.0.2
 scipy==1.8.0
+ShExJSG==0.8.2
 six==1.16.0
 snowballstemmer==2.2.0
+sortedcontainers==2.4.0
 soupsieve==2.2.1
+sparqlslurper==0.5.1
 SPARQLWrapper==2.0.0
 Sphinx==4.5.0
+sphinx-click==4.3.0
 sphinxcontrib-applehelp==1.0.2
 sphinxcontrib-devhelp==1.0.2
 sphinxcontrib-htmlhelp==2.0.0
@@ -67,14 +97,20 @@ sphinxcontrib-qthelp==1.0.3
 sphinxcontrib-serializinghtml==1.1.5
 SQLAlchemy==1.4.35
 sssom==0.3.8
+sssom-schema==0.10.0
 stevedore==1.32.0
 threadpoolctl==3.1.0
+tomli==2.0.1
+tox==3.27.0
+tqdm==4.64.1
+typing_extensions==4.4.0
 Unidecode==1.2.0
 urllib3==1.26.6
 validators==0.18.2
 virtualenv==20.7.2
 virtualenv-clone==0.5.6
 virtualenvwrapper==4.8.4
+watchdog==2.1.9
 whistle==1.0.1
 wrapt==1.14.0
 zipp==3.8.0