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Rebuild following alignment of OMIM and ORDO (#611)
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@twhetzel
twhetzel authored Jul 9, 2024
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2 changes: 1 addition & 1 deletion docs/metrics/doid.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/doid.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/doid.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/gard.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/gard.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/gard.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10cm.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd10cm.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/icd10cm.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10who.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd10who.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/icd10who.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd11foundation.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/icd11foundation.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/icd11foundation.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/ncit.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/ncit.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/ncit.owl

### Entities and axioms

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20 changes: 10 additions & 10 deletions docs/metrics/omim.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/omim.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/omim.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 18 |
| Axioms | 346314 |
| Logical axioms | 22738 |
| Classes | 19512 |
| Axioms | 346439 |
| Logical axioms | 22746 |
| Classes | 19517 |
| Object properties | 7 |
| Data properties | 0 |
| Individuals | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 304042 |
| AnnotationAssertion | 304154 |
| SubAnnotationPropertyOf | 1 |
| Declaration | 19533 |
| SubClassOf | 22738 |
| Declaration | 19538 |
| SubClassOf | 22746 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 18069 |
| prefix_unknown | 18074 |
| oboInOwl | 4 |
| owl | 2 |
| xsd | 1 |
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| Metric | Value |
| ------ | ----- |
| Class | 64978 |
| ObjectSomeValuesFrom | 17808 |
| Class | 64999 |
| ObjectSomeValuesFrom | 17812 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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2 changes: 1 addition & 1 deletion docs/metrics/ordo.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-03/ordo.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-07-09/ordo.owl

### Entities and axioms

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4 changes: 2 additions & 2 deletions docs/reports/migrate.md
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| Ontology | Tot |
|:------------------------------------------------|:-------|
| [GARD](./migrate_gard.md) | 9,370 |
| [ORDO](./migrate_ordo.md) | 84 |
| [OMIM](./migrate_omim.md) | 4 |
| [DOID](./migrate_doid.md) | 33 |
| [NCIT](./migrate_ncit.md) | 2,209 |
| [OMIM](./migrate_omim.md) | 2 |
| [ICD11FOUNDATION](./migrate_icd11foundation.md) | 12,409 |
| [ICD10WHO](./migrate_icd10who.md) | 119 |
| [ORDO](./migrate_ordo.md) | 102 |
| [ICD10CM](./migrate_icd10cm.md) | 1,892 |

### Codebook
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12 changes: 7 additions & 5 deletions docs/reports/migrate_omim.md
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[Interactive FlatGithub table](https://flatgithub.com/monarch-initiative/mondo-ingest?filename=src/ontology/slurp/omim.tsv)

### Migratable terms
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:--------------------------------------------------------------------------------------------------------------|:---------------------|:---------------------------|:--------------------------------------------------------------------------------------------------------------|:--------------|:--------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0971043 | neurodevelopmental disorder with hypotonia, feeding difficulties, facial dysmorphism, and brain abnormalities | OMIM:620852 | MONDO:equivalentTo | neurodevelopmental disorder with hypotonia, feeding difficulties, facial dysmorphism, and brain abnormalities | | |
| MONDO:0971044 | ehlers-danlos syndrome, classic-like, 3 | OMIM:620865 | MONDO:equivalentTo | ehlers-danlos syndrome, classic-like, 3 | | MONDO:0020066 |
| mondo_id | mondo_label | xref | xref_source | original_label | definition | parents |
|:--------------|:-------------------------------------------------------------------------------|:---------------------|:---------------------------|:-------------------------------------------------------------------------------|:--------------|:--------------|
| ID | LABEL | A oboInOwl:hasDbXref | >A oboInOwl:source SPLIT=| | | A IAO:0000115 | SC % |
| MONDO:0971149 | spastic paraplegia 30b, autosomal recessive | OMIM:620607 | MONDO:equivalentTo | spastic paraplegia 30b, autosomal recessive | | MONDO:0019064 |
| MONDO:0971150 | neuronopathy, distal hereditary motor, autosomal recessive 11, with spasticity | OMIM:620854 | MONDO:equivalentTo | neuronopathy, distal hereditary motor, autosomal recessive 11, with spasticity | | MONDO:0015363 |
| MONDO:0971151 | immunodeficiency 122 | OMIM:620869 | MONDO:equivalentTo | immunodeficiency 122 | | MONDO:0021094 |
| MONDO:0971152 | deafness, autosomal recessive 125 | OMIM:620877 | MONDO:equivalentTo | deafness, autosomal recessive 125 | | |
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