check #693
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on: | |
push: | |
branches: [master, devel] | |
pull_request: | |
branches: [master, devel] | |
schedule: | |
- cron: '33 4 * * *' # work 4:33 in the morning | |
name: check | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
WARNINGS_ARE_ERRORS: 1 | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
_R_CHECK_TESTS_NLINES_: 0 # disable limiting of output lines | |
_R_CHECK_CRAN_INCOMING_: false | |
jobs: | |
check: | |
defaults: | |
run: | |
shell: bash | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false # continue runs even when a parallel run failed | |
matrix: | |
# run on ubuntu, macos, windows. 20.04 is more recent than ubuntu-latest, currently. | |
os: [macos-latest, windows-latest, ubuntu-20.04] | |
action: [check] | |
r: [release] | |
include: | |
# additionally run r-devel, but only on ubuntu, and an old R version on an old ubuntu | |
- os: ubuntu-20.04 | |
action: check | |
r: devel | |
- os: ubuntu-16.04 | |
action: check | |
r: 3.5 | |
- os: ubuntu-20.04 | |
action: coverage | |
r: release | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
id: install-r | |
with: | |
r-version: ${{ matrix.r }} | |
- if: runner.os == 'Linux' | |
name: apt-get update | |
run: sudo apt-get update | |
- name: Install curl for Ubuntu | |
# necessary for pkgdown & covr, so we do that on ubuntu 20.04 / R release only | |
if: ${{ matrix.r == 'release' && matrix.os == 'ubuntu-20.04' }} | |
run: sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-tinytex@v2 | |
- name: Create Cache Key | |
shell: Rscript {0} | |
run: | | |
if (!require("remotes", quietly = TRUE)) install.packages("remotes") | |
writeLines(capture.output(print(remotes::dev_package_deps())), ".github/deps.txt") | |
- uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ matrix.os }}-${{ steps.install-r.outputs.installed-r-version }}-${{ hashFiles('.github/deps.txt') }} | |
- shell: Rscript {0} | |
name: install necessary build env packages | |
run: for (req in c("remotes", "roxygen2", "covr", "pkgdown")) if (!require(req, quietly = TRUE)) install.packages(req) | |
- if: runner.os == 'Linux' | |
name: install system requirements | |
run: | | |
while read -r depinst ; do | |
echo "> $depinst" | |
eval sudo $depinst | |
done < <( Rscript -e "writeLines(remotes::system_requirements('ubuntu', '$( . /etc/os-release ; echo $VERSION_ID )'))") | |
- shell: Rscript {0} | |
name: install package dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
- name: Session Info | |
shell: Rscript {0} | |
run: | | |
options(width = 200) | |
installed.packages()[, c("Package", "Version", "Built")] | |
sessionInfo() | |
- name: Document | |
shell: Rscript {0} | |
run: roxygen2::roxygenise() | |
- if: runner.os == 'windows' | |
name: Remove hypertarget from Latex for Windows | |
run: "sed -i 's/\\\\hypertarget{[^}]*}//g' man/*" | |
- name: Build | |
if: ${{ matrix.action != 'coverage' }} | |
working-directory: .. | |
run: 'R CMD build */' | |
- name: Check | |
if: ${{ matrix.action != 'coverage' }} | |
working-directory: .. | |
run: 'R CMD check --as-cran --run-donttest *.tar.gz' | |
- name: Coverage | |
if: ${{ matrix.action == 'coverage' }} | |
shell: Rscript {0} | |
run: covr::codecov(quiet = FALSE, type = "tests") | |
- name: install | |
if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' }} | |
working-directory: .. | |
run: 'R CMD INSTALL *.tar.gz' | |
- name: Build Docs | |
if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' }} | |
shell: Rscript {0} | |
run: | | |
pkgdown::build_site() | |
roxygen2::roxygenise() | |
tools::buildVignettes(dir = ".") | |
- name: Deploy Docs | |
if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' && github.ref == 'refs/heads/master' }} | |
run: | | |
git config --local user.name "github-actions[bot]" | |
git config --local user.email "[email protected]" | |
git checkout --orphan gh-pages | |
git --work-tree=docs add --all | |
git --work-tree=docs commit -m "gh-pages" | |
git push origin HEAD:gh-pages --force | |
- name: Log | |
if: ${{ failure() }} | |
working-directory: .. | |
run: 'cat *.Rcheck/00check.log' | |
- name: Latex Log | |
if: ${{ failure() }} | |
working-directory: .. | |
run: 'cat *.Rcheck/Rdlatex.log' | |