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Wano representation #2

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Wano representation #2

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58 changes: 58 additions & 0 deletions eln2rdf.xml
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<WaNoTemplate>
<WaNoMeta>
<Author>
<Name> J. Kryeziu </Name>
</Author>
<Author>
<Name> J. Schaarschmidt</Name>
</Author>

<Description>
This is a SimStack WaNo for the Eln-to-rdf converter.
</Description>

<Keyword>ElnToRdf</Keyword>
</WaNoMeta>

<WaNoRoot name="ElnToRdf">
<WaNoFile logical_filename="i_eln.zip" name="eln_zip"> ELN zip file </WaNoFile>
<WaNoFile logical_filename="config.yml" name="config_yml"> Config YML file </WaNoFile>

<WaNoBool name="plot-boolean" description= "Optionally have the plot of the graph as an
output">False</WaNoBool>
<WaNoDictBox name="plot_boolean" visibility_condition="%s == True"
visibility_var_path="plot-boolean">
<WaNoString name="plot_path">Plot path</WaNoString>
</WaNoDictBox>

</WaNoRoot>

<WaNoInputFiles>
<WaNoInputFile logical_filename="eln2rdf.py">eln2rdf.py</WaNoInputFile>
</WaNoInputFiles>


<WaNoExecCommand>
NANOVER=V4
CONFIG_PATH=$NANOMATCH/$NANOVER/configs/eln.config
if [ -e $CONFIG_PATH ]; then
echo "loading config from $CONFIG_PATH"
source $CONFIG_PATH
else
echo "loading eln enviroment directly"
simstack_server_mamba_source
conda activate eln
fi
python eln2rdf.py i_eln.zip --keymap config.yml --output output.ttl \
{% if wano["plot-boolean"] %} --plot {{ wano["plot_path"] }} {% endif %}


</WaNoExecCommand>


<WaNoOutputFiles>
<WaNoOutputFile>output.ttl</WaNoOutputFile>
</WaNoOutputFiles>

</WaNoTemplate>