Moving all images to _static directory

maps-as-data · Jul 17, 2024 · 4d2343a · 4d2343a
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diff --git a/docs/source/figures/IoA.png → docs/source/_static/IoA.png b/docs/source/figures/IoA.png → docs/source/_static/IoA.png
diff --git a/docs/source/figures/IoA_0.9.png → docs/source/_static/IoA_0.9.png b/docs/source/figures/IoA_0.9.png → docs/source/_static/IoA_0.9.png
diff --git a/docs/source/figures/annotate.png → docs/source/_static/annotate.png b/docs/source/figures/annotate.png → docs/source/_static/annotate.png
diff --git a/docs/source/figures/annotate_context.png → docs/source/_static/annotate_context.png b/docs/source/figures/annotate_context.png → docs/source/_static/annotate_context.png
diff --git a/docs/source/figures/hist_published_dates.png → docs/source/_static/hist_published_dates.png b/docs/source/figures/hist_published_dates.png → docs/source/_static/hist_published_dates.png
diff --git a/docs/source/figures/in_out_annotate.png → docs/source/_static/in_out_annotate.png b/docs/source/figures/in_out_annotate.png → docs/source/_static/in_out_annotate.png
diff --git a/docs/source/figures/in_out_classify.png → docs/source/_static/in_out_classify.png b/docs/source/figures/in_out_classify.png → docs/source/_static/in_out_classify.png
diff --git a/docs/source/figures/in_out_download.png → docs/source/_static/in_out_download.png b/docs/source/figures/in_out_download.png → docs/source/_static/in_out_download.png
diff --git a/docs/source/figures/in_out_load.png → docs/source/_static/in_out_load.png b/docs/source/figures/in_out_load.png → docs/source/_static/in_out_load.png
diff --git a/...urce/figures/inference_sample_results.png → ...urce/_static/inference_sample_results.png b/...urce/figures/inference_sample_results.png → ...urce/_static/inference_sample_results.png
diff --git a/docs/source/figures/loss.png → docs/source/_static/loss.png b/docs/source/figures/loss.png → docs/source/_static/loss.png
diff --git a/docs/source/figures/patchify.png → docs/source/_static/patchify.png b/docs/source/figures/patchify.png → docs/source/_static/patchify.png
diff --git a/docs/source/figures/pipeline_explained.png → docs/source/_static/pipeline_explained.png b/docs/source/figures/pipeline_explained.png → docs/source/_static/pipeline_explained.png
diff --git a/docs/source/figures/plot_metadata_on_map.png → docs/source/_static/plot_metadata_on_map.png b/docs/source/figures/plot_metadata_on_map.png → docs/source/_static/plot_metadata_on_map.png
diff --git a/docs/source/figures/review_labels.png → docs/source/_static/review_labels.png b/docs/source/figures/review_labels.png → docs/source/_static/review_labels.png
diff --git a/docs/source/figures/river_banner_8bit.png → docs/source/_static/river_banner_8bit.png b/docs/source/figures/river_banner_8bit.png → docs/source/_static/river_banner_8bit.png
diff --git a/docs/source/figures/show.png → docs/source/_static/show.png b/docs/source/figures/show.png → docs/source/_static/show.png
diff --git a/docs/source/figures/show_image.png → docs/source/_static/show_image.png b/docs/source/figures/show_image.png → docs/source/_static/show_image.png
diff --git a/docs/source/figures/show_image_labels_10.png → docs/source/_static/show_image_labels_10.png b/docs/source/figures/show_image_labels_10.png → docs/source/_static/show_image_labels_10.png
diff --git a/docs/source/figures/show_list.png → docs/source/_static/show_list.png b/docs/source/figures/show_list.png → docs/source/_static/show_list.png
diff --git a/docs/source/figures/show_par.png → docs/source/_static/show_par.png b/docs/source/figures/show_par.png → docs/source/_static/show_par.png
diff --git a/docs/source/figures/show_par_RGB.png → docs/source/_static/show_par_RGB.png b/docs/source/figures/show_par_RGB.png → docs/source/_static/show_par_RGB.png
diff --git a/docs/source/figures/show_par_RGB_0.5.png → docs/source/_static/show_par_RGB_0.5.png b/docs/source/figures/show_par_RGB_0.5.png → docs/source/_static/show_par_RGB_0.5.png
diff --git a/docs/source/figures/show_sample_child.png → docs/source/_static/show_sample_child.png b/docs/source/figures/show_sample_child.png → docs/source/_static/show_sample_child.png
diff --git a/docs/source/figures/show_sample_parent.png → docs/source/_static/show_sample_parent.png b/docs/source/figures/show_sample_parent.png → docs/source/_static/show_sample_parent.png
diff --git a/docs/source/figures/show_sample_train_8.png → docs/source/_static/show_sample_train_8.png b/docs/source/figures/show_sample_train_8.png → docs/source/_static/show_sample_train_8.png
diff --git a/docs/source/figures/show_sample_val_8.png → docs/source/_static/show_sample_val_8.png b/docs/source/figures/show_sample_val_8.png → docs/source/_static/show_sample_val_8.png
diff --git a/...figures/tutorial_classification_mnist.png → ..._static/tutorial_classification_mnist.png b/...figures/tutorial_classification_mnist.png → ..._static/tutorial_classification_mnist.png
diff --git a/...rial_classification_one_inch_maps_001.png → ...rial_classification_one_inch_maps_001.png b/...rial_classification_one_inch_maps_001.png → ...rial_classification_one_inch_maps_001.png
diff --git a/...torial_classification_plant_phenotype.png → ...torial_classification_plant_phenotype.png b/...torial_classification_plant_phenotype.png → ...torial_classification_plant_phenotype.png
diff --git a/docs/source/in-depth-resources/worked-examples/geospatial-images.rst b/docs/source/in-depth-resources/worked-examples/geospatial-images.rst
@@ -9,7 +9,7 @@ MapReader was developed for maps and geospatial images.
 Classification of one-inch OS maps
 ----------------------------------
 
-.. image:: ../../figures/tutorial_classification_one_inch_maps_001.png
+.. image:: /_static/tutorial_classification_one_inch_maps_001.png
    :width: 400px
    :target: https://github.com/Living-with-machines/MapReader/tree/main/worked_examples/geospatial
 

diff --git a/docs/source/in-depth-resources/worked-examples/non-geospatial-images.rst b/docs/source/in-depth-resources/worked-examples/non-geospatial-images.rst
@@ -10,7 +10,7 @@ We have provided two examples of this.
 Classification of plant phenotypes
 ----------------------------------
 
-.. image:: ../../figures/tutorial_classification_plant_phenotype.png
+.. image:: /_static/tutorial_classification_plant_phenotype.png
    :width: 400px
    :target: https://github.com/Living-with-machines/MapReader/blob/main/worked_examples/non-geospatial/classification_plant_phenotype/Pipeline.ipynb
 
@@ -21,7 +21,7 @@ It can be found `here <https://github.com/Living-with-machines/MapReader/blob/ma
 Classification of MNIST digits
 ------------------------------
 
-.. image:: ../../figures/tutorial_classification_mnist.png
+.. image:: /_static/tutorial_classification_mnist.png
    :width: 400px
    :target: https://github.com/Living-with-machines/MapReader/blob/main/worked_examples/non-geospatial/classification_mnist/Pipeline.ipynb
 

diff --git a/docs/source/introduction-to-mapreader/what-is-mapreader.rst b/docs/source/introduction-to-mapreader/what-is-mapreader.rst
@@ -8,7 +8,7 @@ What is unique about MapReader?
 
 MapReader is based on the 'patchwork method' in which whole map images are sliced into a grid of squares or 'patches':
 
-.. image:: ../figures/patchify.png
+.. image:: /_static/patchify.png
 
 This unique way of pre-processing map images enables the use of image classification to identify visual features within maps, in order to answer important research questions.
 
@@ -17,7 +17,7 @@ What is 'the MapReader pipeline'?
 
 The MapReader pipeline consists of a linear sequence of tasks:
 
-.. image:: ../figures/pipeline_explained.png
+.. image:: /_static/pipeline_explained.png
 
 Together, these tasks can be used to train a computer vision (CV) classifier to recognize visual features within maps and identify patches containing these features across entire map collections.
 
@@ -30,21 +30,21 @@ What are the inputs and outputs of each stage in the MapReader pipeline?
 ------------------------------------------------------------------------
 
 Download
-^^^^^^^^^
-.. image:: ../figures/in_out_download.png
+~~~~~~~~
+.. image:: /_static/in_out_download.png
     :width: 600px
 
 Load
-^^^^^
-.. image:: ../figures/in_out_load.png
+~~~~
+.. image:: /_static/in_out_load.png
     :width: 600px
 
 Annotate
-^^^^^^^^^
-.. image:: ../figures/in_out_annotate.png
+~~~~~~~~
+.. image:: /_static/in_out_annotate.png
     :width: 600px
 
 Classify (Train and Predict)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-.. image:: ../figures/in_out_classify.png
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.. image:: /_static/in_out_classify.png
     :width: 600px
diff --git a/docs/source/using-mapreader/step-by-step-guide/1-download.rst b/docs/source/using-mapreader/step-by-step-guide/1-download.rst
@@ -84,7 +84,7 @@ To help you visualize your metadata, the boundaries of the map sheets included i
 
      my_ts.plot_all_metadata_on_map()
 
-.. image:: ../../figures/plot_metadata_on_map.png
+.. image:: /_static/plot_metadata_on_map.png
      :width: 400px
      :align: center
 

diff --git a/docs/source/using-mapreader/step-by-step-guide/2-load.rst b/docs/source/using-mapreader/step-by-step-guide/2-load.rst
@@ -283,7 +283,7 @@ To view a random sample of your images, use:
 
     my_files.show_sample(num_samples=3)
 
-.. image:: ../../figures/show_sample_parent.png
+.. image:: /_static/show_sample_parent.png
     :width: 400px
 
 
@@ -295,7 +295,7 @@ If, however, you want to see a random sample of your patches use the ``tree_leve
 
     my_files.show_sample(num_samples=3, tree_level="patch")
 
-.. image:: ../../figures/show_sample_child.png
+.. image:: /_static/show_sample_child.png
     :width: 400px
 
 
@@ -310,7 +310,7 @@ e.g. :
     patch_list = my_files.list_patches()
     my_files.show(patch_list[250:300])
 
-.. image:: ../../figures/show.png
+.. image:: /_static/show.png
     :width: 400px
 
 
@@ -323,7 +323,7 @@ or
     files_to_show = [patch_list[0], patch_list[350], patch_list[400]]
     my_files.show(files_to_show)
 
-.. image:: ../../figures/show_list.png
+.. image:: /_static/show_list.png
     :width: 400px
 
 
@@ -343,7 +343,7 @@ This can be done using:
     parent_list = my_files.list_parents()
     my_files.show_parent(parent_list[0])
 
-.. image:: ../../figures/show_par.png
+.. image:: /_static/show_par.png
     :width: 400px
 
 
@@ -397,7 +397,7 @@ e.g. to view "mean_pixel_R" on your patches:
     parent_list = my_files.list_parents()
     my_files.show_parent(parent_list[0], column_to_plot="mean_pixel_R")
 
-.. image:: ../../figures/show_par_RGB.png
+.. image:: /_static/show_par_RGB.png
     :width: 400px
 
 If you want to see your image underneath, you can specify the ``alpha`` argument, which sets the transparency of your plotted values.
@@ -411,7 +411,7 @@ e.g. to view "mean_pixel_R" on your patches:
     parent_list = my_files.list_parents()
     my_files.show_parent(parent_list[0], column_to_plot="mean_pixel_R", alpha=0.5)
 
-.. image:: ../../figures/show_par_RGB_0.5.png
+.. image:: /_static/show_par_RGB_0.5.png
     :width: 400px
 
 .. note:: The ``column_to_plot`` argument can also be used with the ``show()`` method.

diff --git a/docs/source/using-mapreader/step-by-step-guide/4-classify/train.rst b/docs/source/using-mapreader/step-by-step-guide/4-classify/train.rst
@@ -65,7 +65,7 @@ For example, to show your "railspace" label:
 
 .. todo:: update this pic
 
-.. image:: ../../../figures/show_image_labels_10.png
+.. image:: /_static/show_image_labels_10.png
     :width: 400px
 
 
@@ -78,7 +78,7 @@ The ``.review_labels()`` method, which returns an interactive tool for adjusting
 
     annotated_images.review_labels()
 
-.. image:: ../../../figures/review_labels.png
+.. image:: /_static/review_labels.png
     :width: 400px
 
 
@@ -515,7 +515,7 @@ e.g. to plot the loss during each epoch of training and validation:
         legends=["Train", "Valid"],
     )
 
-.. image:: ../../../figures/loss.png
+.. image:: /_static/loss.png
     :width: 400px
 
 
@@ -535,7 +535,7 @@ To see a sample of your predictions, use:
 
     my_classifier.show_inference_sample_results(label="railspace")
 
-.. image:: ../../../figures/inference_sample_results.png
+.. image:: /_static/inference_sample_results.png
     :width: 400px
 
 

diff --git a/docs/source/using-mapreader/step-by-step-guide/6-spot-text.rst b/docs/source/using-mapreader/step-by-step-guide/6-spot-text.rst
@@ -162,10 +162,10 @@ If two polygons overlap with intersection over area greater than the minimum IoA
 
 Below are two examples of this:
 
-.. image:: ../../figures/IoA.png
+.. image:: /_static/IoA.png
     :width: 400px
 
-.. image:: ../../figures/IoA_0.9.png
+.. image:: /_static/IoA_0.9.png
     :width: 400px
 
 By default, the minimum IoA is set to 0.7 so the deduplication algorithm will only remove the smaller polygon in the second example.