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Update SSSOM Extended Prefix Map (#507)
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This pull request updates sssom extended prefix map (epm). Make sure you
run make tests manually.

Co-authored-by: matentzn <[email protected]>
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@github-actions @matentzn
github-actions[bot] and matentzn authored Mar 25, 2024
1 parent 12a740f commit 7567414
Showing 1 changed file with 78 additions and 5 deletions.
83 changes: 78 additions & 5 deletions src/sssom/obo.epm.json
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Original file line number Diff line number Diff line change
Expand Up @@ -563,13 +563,21 @@
"uri_prefix_synonyms": [
"http://bioregistry.io/CHEMINF:",
"http://bioregistry.io/cheminf:",
"http://identifiers.org/CHEMINF/",
"http://identifiers.org/CHEMINF:",
"http://identifiers.org/cheminf/CHEMINF:",
"http://semanticscience.org/resource/CHEMINF_",
"http://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_",
"http://www.ebi.ac.uk/ols4/ontologies/cheminf/classes?obo_id=CHEMINF:",
"https://bioregistry.io/CHEMINF:",
"https://bioregistry.io/cheminf:",
"https://identifiers.org/CHEMINF/",
"https://identifiers.org/CHEMINF:",
"https://identifiers.org/cheminf/CHEMINF:",
"https://purl.obolibrary.org/obo/CHEMINF_",
"https://semanticscience.org/resource/CHEMINF_",
"https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_"
"https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_",
"https://www.ebi.ac.uk/ols4/ontologies/cheminf/classes?obo_id=CHEMINF:"
]
},
{
Expand Down Expand Up @@ -2071,6 +2079,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "EV",
"prefix_synonyms": [
"ev"
Expand Down Expand Up @@ -2474,6 +2483,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "GALLONT",
"prefix_synonyms": [
"gallont"
Expand Down Expand Up @@ -3333,6 +3343,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "MAO",
"prefix_synonyms": [
"mao"
Expand Down Expand Up @@ -3419,6 +3430,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "MCRO",
"prefix_synonyms": [
"mcro"
Expand All @@ -3427,9 +3439,17 @@
"uri_prefix_synonyms": [
"http://bioregistry.io/MCRO:",
"http://bioregistry.io/mcro:",
"http://identifiers.org/MCRO/",
"http://identifiers.org/MCRO:",
"http://identifiers.org/mcro/MCRO:",
"http://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:",
"https://bioregistry.io/MCRO:",
"https://bioregistry.io/mcro:",
"https://purl.obolibrary.org/obo/MCRO_"
"https://identifiers.org/MCRO/",
"https://identifiers.org/MCRO:",
"https://identifiers.org/mcro/MCRO:",
"https://purl.obolibrary.org/obo/MCRO_",
"https://www.ebi.ac.uk/ols4/ontologies/mcro/classes?obo_id=MCRO:"
]
},
{
Expand Down Expand Up @@ -3469,6 +3489,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "MFO",
"prefix_synonyms": [
"mfo"
Expand Down Expand Up @@ -4208,6 +4229,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "NGBO",
"prefix_synonyms": [
"ngbo"
Expand Down Expand Up @@ -4377,11 +4399,19 @@
"uri_prefix_synonyms": [
"http://bioregistry.io/OBCS:",
"http://bioregistry.io/obcs:",
"http://identifiers.org/OBCS/",
"http://identifiers.org/OBCS:",
"http://identifiers.org/obcs/OBCS:",
"http://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_",
"http://www.ebi.ac.uk/ols4/ontologies/obcs/classes?obo_id=OBCS:",
"https://bioregistry.io/OBCS:",
"https://bioregistry.io/obcs:",
"https://identifiers.org/OBCS/",
"https://identifiers.org/OBCS:",
"https://identifiers.org/obcs/OBCS:",
"https://purl.obolibrary.org/obo/OBCS_",
"https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_"
"https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_",
"https://www.ebi.ac.uk/ols4/ontologies/obcs/classes?obo_id=OBCS:"
]
},
{
Expand Down Expand Up @@ -4429,6 +4459,7 @@
]
},
{
"pattern": "^\\d+$",
"prefix": "OCCO",
"prefix_synonyms": [
"occo"
Expand Down Expand Up @@ -4757,11 +4788,19 @@
"uri_prefix_synonyms": [
"http://bioregistry.io/OPL:",
"http://bioregistry.io/opl:",
"http://identifiers.org/OPL/",
"http://identifiers.org/OPL:",
"http://identifiers.org/opl/OPL:",
"http://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_",
"http://www.ebi.ac.uk/ols4/ontologies/opl/classes?obo_id=OPL:",
"https://bioregistry.io/OPL:",
"https://bioregistry.io/opl:",
"https://identifiers.org/OPL/",
"https://identifiers.org/OPL:",
"https://identifiers.org/opl/OPL:",
"https://purl.obolibrary.org/obo/OPL_",
"https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_"
"https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_",
"https://www.ebi.ac.uk/ols4/ontologies/opl/classes?obo_id=OPL:"
]
},
{
Expand Down Expand Up @@ -5933,11 +5972,19 @@
"uri_prefix_synonyms": [
"http://bioregistry.io/STATO:",
"http://bioregistry.io/stato:",
"http://identifiers.org/STATO/",
"http://identifiers.org/STATO:",
"http://identifiers.org/stato/STATO:",
"http://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_",
"http://www.ebi.ac.uk/ols4/ontologies/stato/classes?obo_id=STATO:",
"https://bioregistry.io/STATO:",
"https://bioregistry.io/stato:",
"https://identifiers.org/STATO/",
"https://identifiers.org/STATO:",
"https://identifiers.org/stato/STATO:",
"https://purl.obolibrary.org/obo/STATO_",
"https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_"
"https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_",
"https://www.ebi.ac.uk/ols4/ontologies/stato/classes?obo_id=STATO:"
]
},
{
Expand Down Expand Up @@ -6398,6 +6445,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "VSAO",
"prefix_synonyms": [
"VSAO_RETIRED",
Expand Down Expand Up @@ -6663,6 +6711,7 @@
]
},
{
"pattern": "^\\d{7}$",
"prefix": "ZEA",
"prefix_synonyms": [
"zea"
Expand Down Expand Up @@ -20025,6 +20074,16 @@
"https://open-services.net/ns/core#"
]
},
{
"pattern": "^\\d+$",
"prefix": "osti.article",
"uri_prefix": "https://www.osti.gov/biblio/",
"uri_prefix_synonyms": [
"http://bioregistry.io/osti.article:",
"http://www.osti.gov/biblio/",
"https://bioregistry.io/osti.article:"
]
},
{
"pattern": "^A[A-Z]+\\d+$",
"prefix": "otl",
Expand Down Expand Up @@ -23875,6 +23934,20 @@
"https://www.w3.org/2003/11/swrl#"
]
},
{
"pattern": "^[0-9]*\\.*[0-9]*$",
"prefix": "synapse",
"uri_prefix": "https://repo-prod.prod.sagebase.org/ga4gh/drs/v1/objects/syn",
"uri_prefix_synonyms": [
"http://bioregistry.io/synapse:",
"http://identifiers.org/synapse/",
"http://identifiers.org/synapse:",
"http://repo-prod.prod.sagebase.org/ga4gh/drs/v1/objects/syn",
"https://bioregistry.io/synapse:",
"https://identifiers.org/synapse/",
"https://identifiers.org/synapse:"
]
},
{
"pattern": "^T3D\\d+$",
"prefix": "t3db",
Expand Down

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