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Update SSSOM Extended Prefix Map (#518)
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This pull request updates sssom extended prefix map (epm). Make sure you
run make tests manually.

Co-authored-by: matentzn <[email protected]>
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@github-actions @matentzn
github-actions[bot] and matentzn authored Apr 8, 2024
1 parent be8a77b commit 01965f4
Showing 1 changed file with 126 additions and 0 deletions.
126 changes: 126 additions & 0 deletions src/sssom/obo.epm.json
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Original file line number Diff line number Diff line change
Expand Up @@ -5990,6 +5990,20 @@
"https://n2t.net/swisslipid:"
]
},
{
"prefix": "SLSO",
"prefix_synonyms": [
"slso"
],
"uri_prefix": "http://purl.obolibrary.org/obo/SLSO_",
"uri_prefix_synonyms": [
"http://bioregistry.io/SLSO:",
"http://bioregistry.io/slso:",
"https://bioregistry.io/SLSO:",
"https://bioregistry.io/slso:",
"https://purl.obolibrary.org/obo/SLSO_"
]
},
{
"pattern": "^\\d{7}$",
"prefix": "SO",
Expand Down Expand Up @@ -9588,54 +9602,74 @@
{
"pattern": "^[0-9]+$",
"prefix": "civic.aid",
"prefix_synonyms": [
"civic.assertion"
],
"uri_prefix": "https://civicdb.org/links/assertions/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.aid:",
"http://bioregistry.io/civic.assertion:",
"http://civicdb.org/links/assertions/",
"http://identifiers.org/civic.aid/",
"http://identifiers.org/civic.aid:",
"https://bioregistry.io/civic.aid:",
"https://bioregistry.io/civic.assertion:",
"https://identifiers.org/civic.aid/",
"https://identifiers.org/civic.aid:"
]
},
{
"pattern": "^[0-9]+$",
"prefix": "civic.did",
"prefix_synonyms": [
"civic.disease"
],
"uri_prefix": "https://civicdb.org/links/diseases/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.did:",
"http://bioregistry.io/civic.disease:",
"http://civicdb.org/links/diseases/",
"http://identifiers.org/civic.did/",
"http://identifiers.org/civic.did:",
"https://bioregistry.io/civic.did:",
"https://bioregistry.io/civic.disease:",
"https://identifiers.org/civic.did/",
"https://identifiers.org/civic.did:"
]
},
{
"pattern": "^[0-9]+$",
"prefix": "civic.eid",
"prefix_synonyms": [
"civic.evidence"
],
"uri_prefix": "https://civicdb.org/links/evidence/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.eid:",
"http://bioregistry.io/civic.evidence:",
"http://civicdb.org/links/evidence/",
"http://identifiers.org/civic.eid/",
"http://identifiers.org/civic.eid:",
"https://bioregistry.io/civic.eid:",
"https://bioregistry.io/civic.evidence:",
"https://identifiers.org/civic.eid/",
"https://identifiers.org/civic.eid:"
]
},
{
"pattern": "^[0-9]+$",
"prefix": "civic.gid",
"prefix_synonyms": [
"civic.gene"
],
"uri_prefix": "https://civicdb.org/links/gene/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.gene:",
"http://bioregistry.io/civic.gid:",
"http://civicdb.org/links/gene/",
"http://identifiers.org/civic.gid/",
"http://identifiers.org/civic.gid:",
"https://bioregistry.io/civic.gene:",
"https://bioregistry.io/civic.gid:",
"https://identifiers.org/civic.gid/",
"https://identifiers.org/civic.gid:"
Expand All @@ -9644,12 +9678,17 @@
{
"pattern": "^[0-9]+$",
"prefix": "civic.mpid",
"prefix_synonyms": [
"civic.molecularprofile"
],
"uri_prefix": "https://civicdb.org/links/molecular_profile/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.molecularprofile:",
"http://bioregistry.io/civic.mpid:",
"http://civicdb.org/links/molecular_profile/",
"http://identifiers.org/civic.mpid/",
"http://identifiers.org/civic.mpid:",
"https://bioregistry.io/civic.molecularprofile:",
"https://bioregistry.io/civic.mpid:",
"https://identifiers.org/civic.mpid/",
"https://identifiers.org/civic.mpid:"
Expand All @@ -9658,26 +9697,36 @@
{
"pattern": "^[0-9]+$",
"prefix": "civic.sid",
"prefix_synonyms": [
"civic.source"
],
"uri_prefix": "https://civicdb.org/links/sources/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.sid:",
"http://bioregistry.io/civic.source:",
"http://civicdb.org/links/sources/",
"http://identifiers.org/civic.sid/",
"http://identifiers.org/civic.sid:",
"https://bioregistry.io/civic.sid:",
"https://bioregistry.io/civic.source:",
"https://identifiers.org/civic.sid/",
"https://identifiers.org/civic.sid:"
]
},
{
"pattern": "^[0-9]+$",
"prefix": "civic.tid",
"prefix_synonyms": [
"civic.therapy"
],
"uri_prefix": "https://civicdb.org/links/drugs/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.therapy:",
"http://bioregistry.io/civic.tid:",
"http://civicdb.org/links/drugs/",
"http://identifiers.org/civic.tid/",
"http://identifiers.org/civic.tid:",
"https://bioregistry.io/civic.therapy:",
"https://bioregistry.io/civic.tid:",
"https://identifiers.org/civic.tid/",
"https://identifiers.org/civic.tid:"
Expand All @@ -9686,12 +9735,17 @@
{
"pattern": "^[0-9]+$",
"prefix": "civic.vgid",
"prefix_synonyms": [
"civic.variantgroup"
],
"uri_prefix": "https://civicdb.org/links/variant_group/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.variantgroup:",
"http://bioregistry.io/civic.vgid:",
"http://civicdb.org/links/variant_group/",
"http://identifiers.org/civic.vgid/",
"http://identifiers.org/civic.vgid:",
"https://bioregistry.io/civic.variantgroup:",
"https://bioregistry.io/civic.vgid:",
"https://identifiers.org/civic.vgid/",
"https://identifiers.org/civic.vgid:"
Expand All @@ -9700,13 +9754,18 @@
{
"pattern": "^[0-9]+$",
"prefix": "civic.vid",
"prefix_synonyms": [
"civic.variant"
],
"uri_prefix": "https://civicdb.org/links/variant/",
"uri_prefix_synonyms": [
"http://bioregistry.io/civic.variant:",
"http://bioregistry.io/civic.vid:",
"http://civic.genome.wustl.edu/links/variants/",
"http://civicdb.org/links/variant/",
"http://identifiers.org/civic.vid/",
"http://identifiers.org/civic.vid:",
"https://bioregistry.io/civic.variant:",
"https://bioregistry.io/civic.vid:",
"https://civic.genome.wustl.edu/links/variants/",
"https://identifiers.org/civic.vid/",
Expand Down Expand Up @@ -10286,6 +10345,26 @@
"https://bioregistry.io/cpt:"
]
},
{
"prefix": "cran",
"uri_prefix": "https://cran.r-project.org/web/packages/",
"uri_prefix_synonyms": [
"http://CRAN.R-project.org/package=",
"http://bioregistry.io/cran:",
"http://cran.r-project.org/web/packages/",
"https://CRAN.R-project.org/package=",
"https://bioregistry.io/cran:"
]
},
{
"prefix": "crates",
"uri_prefix": "https://crates.io/crates/",
"uri_prefix_synonyms": [
"http://bioregistry.io/crates:",
"http://crates.io/crates/",
"https://bioregistry.io/crates:"
]
},
{
"pattern": "^[0-9]+$",
"prefix": "crisprdb",
Expand Down Expand Up @@ -10455,6 +10534,16 @@
"https://bioregistry.io/ctis:"
]
},
{
"pattern": "^CTRI/\\d{4}/\\d{2}/\\d+$",
"prefix": "ctri",
"uri_prefix": "https://trialsearch.who.int/Trial2.aspx?TrialID=",
"uri_prefix_synonyms": [
"http://bioregistry.io/ctri:",
"http://trialsearch.who.int/Trial2.aspx?TrialID=",
"https://bioregistry.io/ctri:"
]
},
{
"pattern": "^[A-Za-z_0-9]+$",
"prefix": "cubedb",
Expand Down Expand Up @@ -19338,6 +19427,15 @@
"https://bioregistry.io/novus:"
]
},
{
"prefix": "npm",
"uri_prefix": "https://www.npmjs.com/package/",
"uri_prefix_synonyms": [
"http://bioregistry.io/npm:",
"http://www.npmjs.com/package/",
"https://bioregistry.io/npm:"
]
},
{
"pattern": "^\\d+$",
"prefix": "npo",
Expand Down Expand Up @@ -19401,6 +19499,16 @@
"https://bioregistry.io/nxr:"
]
},
{
"pattern": "^[1-9]\\d{3,7}$",
"prefix": "nztcs",
"uri_prefix": "https://nztcs.org.nz/nztcs-species/",
"uri_prefix_synonyms": [
"http://bioregistry.io/nztcs:",
"http://nztcs.org.nz/nztcs-species/",
"https://bioregistry.io/nztcs:"
]
},
{
"prefix": "oa",
"uri_prefix": "http://www.w3.org/ns/oa#",
Expand Down Expand Up @@ -20167,6 +20275,15 @@
"https://n2t.net/p3db.site:"
]
},
{
"prefix": "packagist",
"uri_prefix": "https://packagist.org/packages/",
"uri_prefix_synonyms": [
"http://bioregistry.io/packagist:",
"http://packagist.org/packages/",
"https://bioregistry.io/packagist:"
]
},
{
"pattern": "^\\d+$",
"prefix": "paleodb",
Expand Down Expand Up @@ -22612,6 +22729,15 @@
"https://scicrunch.org/resolver/RRID:RRRC_"
]
},
{
"prefix": "rubygems",
"uri_prefix": "https://rubygems.org/gems/",
"uri_prefix_synonyms": [
"http://bioregistry.io/rubygems:",
"http://rubygems.org/gems/",
"https://bioregistry.io/rubygems:"
]
},
{
"pattern": "^[0-9a-z]{24,24}$",
"prefix": "runbiosimulations",
Expand Down

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