Tests And Linting

feat: Make repository `refresh` and `expunge` optional, Adds `auto_commit` option. #5760

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Run time

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Job	Run time
validate	2m 16s
test-platform-compat	0s
test (3.11) / test	3m 58s
test (3.8) / test	3m 58s
test (3.10) / test	3m 48s
test (3.9) / test	3m 43s
build-docs	2m 19s
codeql	0s
snyk	0s
sonar	0s
	20m 2s