added notes

README.md

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 - This repo contains code for the paper `Bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants` (technical report coming soon) by  Anusri Pampari*, Anna Shcherbina*, Anshul Kundaje. (*authors contributed equally)  
 - Please contact [Anusri Pampari] (\<first-name\>@stanford.edu) for suggestions and comments. 
 - Here is a link to the [slides](https://docs.google.com/presentation/d/1Ow6K8TYN40u7T3ODdo-JRCLuv5fUUacA/edit?usp=sharing&ouid=104820480456877027097&rtpof=true&sd=true), [ISMB talk](https://www.youtube.com/watch?v=3W3JeJvvjLc) and a comprehensive [tutorial](https://github.com/kundajelab/chrombpnet/wiki). Please see the [FAQ](https://github.com/kundajelab/chrombpnet/wiki/FAQ) and file a github [issue](https://github.com/kundajelab/chrombpnet/issues) if you have questions.
+- If you are using chrombpnet <= v0.1.3 please refer to the note here - https://github.com/kundajelab/chrombpnet/wiki/Denovo-motif-discovery 
 
 Chromatin profiles (DNASE-seq and ATAC-seq) exhibit multi-resolution shapes and spans regulated by co-operative binding of transcription factors (TFs). This complexity is further difficult to mine because of confounding bias from enzymes (DNASE-I/Tn5) used in these assays. Existing methods do not account for this complexity at base-resolution and do not account for enzyme bias correctly, thus missing the high-resolution architecture of these profiles. Here we introduce ChromBPNet to address both these aspects.
 
@@ -211,8 +212,10 @@ For more information, also see:
 
 ## How to Cite
 
+If github citations are not allowed in your submissions please reach out to Anusri Pampari and Anshul Kundaje. 
 If you're using ChromBPNet in your work, please cite as follows:
 
+
 ```
 @software{Pampari_Bias_factorized_base-resolution_2023,
 author = {Pampari, Anusri and Shcherbina, Anna and Nair, Surag and Schreiber, Jacob and Patel, Aman and Wang, Austin and Kundu, Soumya and Shrikumar, Avanti and Kundaje, Anshul},