Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update/latest #4

Merged
merged 73 commits into from
Jan 25, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
73 commits
Select commit Hold shift + click to select a range
ffe7a19
Adding the ability to deploy a seperate postgres instance for each se…
EliseCastle23 Mar 3, 2023
1378df3
setting the default to 'false' for creating a separate postgres insta…
EliseCastle23 Mar 3, 2023
44d7281
Fixing lint issues
EliseCastle23 Mar 8, 2023
764b8e0
removing the indent to resolve linting issues
EliseCastle23 Mar 8, 2023
a3c5662
forgot to make the same changes to wts and sheepdog
EliseCastle23 Mar 8, 2023
fd2b3ab
Merge pull request #103 from uc-cdis/feat/GPE-796
EliseCastle23 Mar 8, 2023
2bb206d
Add small fixes, pin peregrine to 2023.01, portal to master (#104)
jawadqur Mar 13, 2023
fcaa662
Adding/modifying some of the documentation for the values of the subc…
EliseCastle23 Mar 13, 2023
4a0e398
Merge branch 'master' into feat/GPE-623
EliseCastle23 Mar 13, 2023
1700c08
correcting the chart versions
EliseCastle23 Mar 13, 2023
0f38777
correcting the dependency chart version
EliseCastle23 Mar 14, 2023
e2ba091
removing trailing spaces to get rid of linting errors
EliseCastle23 Mar 14, 2023
c5258af
removing trailing spaces from audit
EliseCastle23 Mar 14, 2023
5b2f1ec
missed some trailing spaces
EliseCastle23 Mar 14, 2023
ed3148d
missed some trailing spaces
EliseCastle23 Mar 14, 2023
1a8c35d
bumping up elasticsearch version to see if linting issue will resolve
EliseCastle23 Mar 14, 2023
a194376
removing more trailing spaces
EliseCastle23 Mar 15, 2023
708d888
Merge pull request #105 from uc-cdis/feat/GPE-623
EliseCastle23 Mar 15, 2023
ef89a4b
Fix sheepdog configuration (#107)
jawadqur Mar 15, 2023
ce805e2
Fix error in manifestservice yaml (#108)
jawadqur Mar 16, 2023
76fcbe9
correcting selector label mismatch for the manifestservice (#109)
EliseCastle23 Mar 16, 2023
5ccd0e0
Adding a new labeling strategy for our Helm charts (#110)
EliseCastle23 Mar 30, 2023
512e232
Fix bug in indexd and presigned-url-fence (#114)
jawadqur Apr 7, 2023
a749698
Add CONTRIBUTION.md (#115)
jawadqur Apr 13, 2023
ce5779e
adding pod disruption budgets to help improve availability. The commo…
EliseCastle23 May 4, 2023
4336c41
updated the commons chart version.
EliseCastle23 May 4, 2023
c4f0169
bumping up elasticsearch chart version
EliseCastle23 May 4, 2023
ad5b2e1
Merge pull request #122 from uc-cdis/feat/GPE-946
EliseCastle23 May 4, 2023
b3c2798
Documentation and various fixes/updates (#121)
jawadqur May 8, 2023
c7b8959
Remove unused global bucket configuration (#127)
jawadqur May 8, 2023
ac235dc
Setting up usersync job for helm.
EliseCastle23 May 12, 2023
2a56f00
testing a fix for linting error.
EliseCastle23 May 12, 2023
40d0706
fixing chart.yaml for gen3 umbrella chart
EliseCastle23 May 12, 2023
5adfc0b
forgot to bump up the common chart version.
EliseCastle23 May 15, 2023
b6ced2d
updating the gen3 umbrella chart
EliseCastle23 May 15, 2023
8651f33
fixing indentation and trailing spaces in fence values.yaml file
EliseCastle23 May 15, 2023
b96089c
moving the seperator in the serviceaccount.yaml file
EliseCastle23 May 15, 2023
81bc072
changing separator location
EliseCastle23 May 15, 2023
ba8598f
adding an extra space
EliseCastle23 May 15, 2023
a3f217d
changin seperator again
EliseCastle23 May 15, 2023
1e55194
adding two seperators for linting
EliseCastle23 May 15, 2023
6529b3d
moving the userync sa and cluster role to a separate sheet due to lin…
EliseCastle23 May 15, 2023
24f99f8
- removing userysnc values from the global manifest and putting them …
EliseCastle23 May 16, 2023
2348306
Update workflow to use GITHUB_OUTPUT (#130)
SpencerAxelrod May 17, 2023
0d7c118
commenting out the creation of the fence configmap in the usersync cr…
EliseCastle23 May 18, 2023
8597e5b
adding "slackWebHook" environment var to init container.
EliseCastle23 May 18, 2023
f7bd498
Merge branch 'master' into feat/GPE--930
jawadqur May 18, 2023
4415e61
Merge pull request #129 from uc-cdis/feat/GPE--930
EliseCastle23 May 18, 2023
e97c88a
removing fence-ssh.yaml as it is not needed. (#131)
EliseCastle23 Jun 5, 2023
6522799
Remove erroneous fence config (#132)
jawadqur Jun 5, 2023
5951c4c
Bump gen3 chart
jawadqur Jun 5, 2023
5ab4b47
Merge pull request #133 from uc-cdis/fix/fence-ssh-error
jawadqur Jun 5, 2023
1825f1f
Remove erroneous usersync configmap
jawadqur Jun 13, 2023
32004a6
Merge pull request #134 from uc-cdis/feat/usersync-cm-error
jawadqur Jun 13, 2023
1696ac1
allowing the "imagePullPolicy" to be configurable for these charts.
EliseCastle23 Jul 3, 2023
b2f442b
bumping up the gen3 helm chart version
EliseCastle23 Jul 3, 2023
39dc440
correcting chart version
EliseCastle23 Jul 3, 2023
0456a9b
fixing chart version for sheepdog
EliseCastle23 Jul 3, 2023
b800bff
Merge pull request #135 from uc-cdis/feat/imagePullPolicy
EliseCastle23 Jul 3, 2023
84e55e5
Add role binding for sower
jawadqur Jul 27, 2023
65ada8d
Move sower config to values
jawadqur Jul 31, 2023
bea2a85
Merge pull request #137 from uc-cdis/fix/sower-rb
jawadqur Aug 2, 2023
c8fba8f
Update fence-service-ga4gh.conf
jawadqur Sep 21, 2023
986f886
Update Chart.yaml
jawadqur Sep 21, 2023
534b09f
Update revproxy and create a new gen3 release
jawadqur Sep 21, 2023
e2473bf
Merge pull request #139 from uc-cdis/jawadqur-patch-1
jawadqur Sep 21, 2023
c20865b
added documentation to raise vm.max_map_count
uwwint Oct 26, 2023
3d28f75
Merge pull request #145 from AustralianBioCommons/fix/document_max_map
jawadqur Oct 26, 2023
eb96031
Updated pre-built portal documenation
flashguerdon Oct 27, 2023
8c6fa6a
Merge pull request #146 from AustralianBioCommons/fix/document_portal…
jawadqur Oct 27, 2023
87a0726
Elasticsearch 7 support (#143)
jawadqur Nov 28, 2023
cd64974
merge latest helm chart updates
hadams95 Jan 24, 2024
b8a3234
remove gitops json value from portal values since we that is now a mo…
hadams95 Jan 24, 2024
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 3 additions & 1 deletion .github/ct.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,9 @@ chart-dirs:
- helm
chart-repos:
- bitnami=https://charts.bitnami.com/bitnami
- elastic=https://helm.elastic.co
helm-extra-args: --timeout 600s
check-version-increment: true
debug: false
validate-maintainers: false
validate-maintainers: false
helm-dependency-extra-args: "--skip-refresh"
34 changes: 23 additions & 11 deletions .github/workflows/lint_test.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -22,29 +22,41 @@ jobs:
check-latest: true

- name: Set up chart-testing
uses: helm/chart-testing-action@v2.3.1
uses: helm/chart-testing-action@v2.6.1

- name: Run chart-testing (list-changed)
id: list-changed
run: |
changed=$(ct list-changed --config .github/ct.yaml)
if [[ -n "$changed" ]]; then
echo "::set-output name=changed::true"
echo "changed=true >> $GITHUB_OUTPUT"
fi

- name: Run chart-testing (lint)
run: ct lint --config .github/ct.yaml

# deploy-charts-to-kind:
# name: ${{ matrix.environments }} - gen3 data portal build

# TODO: add back in when we have tests
# deploy-and-test-chart:
# name: Deploy and Test Chart
# timeout-minutes: 20
# runs-on: ubuntu-latest
# needs: [get-changes-for-envs]
# if: ${{ needs.get-changes-for-envs.outputs.matrix != '[]' && needs.get-changes-for-envs.outputs.matrix != '' }}
# steps:

# - name: Checkout
# uses: actions/checkout@v2
# with:
# fetch-depth: 0

# - name: Set up Helm
# uses: azure/setup-helm@v3

# - name: Set up chart-testing
# uses: helm/[email protected]


# - name: Create kind cluster
# uses: helm/kind-action@v1.4.0
# if: steps.list-changed.outputs.changed == 'true'
# uses: helm/kind-action@v1.8.0


# - name: Run chart-testing (install)
# run: ct install
# - name: Run chart install + testing
# run: ct install --charts ./helm/gen3 --config .github/ct.yaml
4 changes: 3 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
@@ -1,4 +1,6 @@
postgres.txt
**/charts/
notes/
Chart.lock
Chart.lock
.DS_Store
_sample-*/
Loading
Loading