transite 1.6.0

• Bioconductor 3.11 release
• changed function names to adhere to tidyverse style guide (breaking change)
• change method names to adhere to tidyverse style guide (breaking change)
• changed parameter names to adhere to tidyverse style guide (breaking change)
• changed internal variable names to adhere to tidyverse style guide
• fixed issue with mixed cached and uncached sequences
• added unit tests
• fixed issue with uninitialized IUPAC table
• removed unused C++ functions
• gracefully stop cluster after parLapply
• added transcript values overlay to spectrum plots
• fixed issue due to floating point machine precision
• improved efficiency of transcript set shuffling
• replaced Rcpp::sample() with Rcpp::RcppArmadillo::sample() to avoid memory leak
• fix roxygen annotation for package data

transite 1.4.0

v1.4.0

Adjust README.md to Bioconductor 3.10

transite 1.2.1

• update author list

transite 1.2.0

• Bioconductor 3.9 release

transite 1.1.2

• updated roxygen2
• updated license
• clarified argument description of SPMA
• fixed issue with multi-threaded cluster environment

transite 1.0.2

• updated roxygen2
• updated license
• clarified argument description of SPMA
• fixed issue with multi-threaded cluster environment

transite 1.0.1

• fixed typo in vignette
• added code example for drawVolcanoPlot function
• increased size of circles for motif-associated k-mers in drawVolcanoPlot function

transite 1.0.0

Initial release on Bioconductor 3.8 release branch

transite 0.99.4

Initial release on Bioconductor