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transite 1.6.0

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@kkrismer kkrismer released this 03 May 20:27
· 15 commits to RELEASE_3_11 since this release
0bd91aa
  • Bioconductor 3.11 release
  • changed function names to adhere to tidyverse style guide (breaking change)
  • change method names to adhere to tidyverse style guide (breaking change)
  • changed parameter names to adhere to tidyverse style guide (breaking change)
  • changed internal variable names to adhere to tidyverse style guide
  • fixed issue with mixed cached and uncached sequences
  • added unit tests
  • fixed issue with uninitialized IUPAC table
  • removed unused C++ functions
  • gracefully stop cluster after parLapply
  • added transcript values overlay to spectrum plots
  • fixed issue due to floating point machine precision
  • improved efficiency of transcript set shuffling
  • replaced Rcpp::sample() with Rcpp::RcppArmadillo::sample() to avoid memory leak
  • fix roxygen annotation for package data