Fix expected test outcomes

kcri-tz · Jul 22, 2024 · f5e1bbf · f5e1bbf
1 parent aa62e00
commit f5e1bbf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/test/expect/test-10-fa-live/bap-summary.tsv b/test/expect/test-10-fa-live/bap-summary.tsv
@@ -1,2 +1,2 @@
 # s_id	n_reads	nt_read	pct_q30	n_ctgs	nt_ctgs	n1	n50	l50	avg_dp	q30_dp	ref_len	pct_gc	species	mlst	amr_cls	amr_res	dis_res	vir_gen	plasmid	pmlsts	cgst	amr_gen	amr_mut	dis_gen
-test	NA	NA	NA	447	4812883	159745	28438	47	NA	NA	4737400	50.8	Escherichia coli	Escherichia coli#1 ST44 [adk:10 fumC:11 gyrB:4 icd:8 mdh:8 purA:8 recA:7],Escherichia coli#2 ST2 [dinB:8 icdA:2 pabB:7 polB:3 putP:7 trpA:1 trpB:4 uidA:2]	aminocyclitol,aminoglycoside,amphenicol,beta-lactam,folate pathway antagonist,macrolide,quinolone,tetracycline	amikacin,amoxicillin,amoxicillin+clavulanic acid,ampicillin,ampicillin+clavulanic acid,azithromycin,aztreonam,cefepime,cefotaxime,ceftazidime,ceftriaxone,chloramphenicol,ciprofloxacin,dibekacin,doxycycline,erythromycin,fluoroquinolone,gentamicin,minocycline,nalidixic acid,netilmicin,piperacillin,piperacillin+tazobactam,sisomicin,spectinomycin,spiramycin,streptomycin,sulfamethoxazole,telithromycin,tetracycline,ticarcillin,tobramycin,trimethoprim	benzylkonium chloride,cetylpyridinium chloride,chlorhexidine,ethidium bromide,hydrogen peroxide	AslA,anr,csgA,fdeC,fimH,gad,hha,hlyE,iucC,iutA,nlpI,sitA,terC,traJ,traT,yehA,yehB,yehC,yehD	Col(MG828),Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII	IncF RST[F31:A4:B1]		aac(3)-IIa,aac(6')-Ib-cr,aadA5,aph(3'')-Ib,aph(6)-Id,blaCTX-M-15,blaOXA-1,catB3,dfrA17,mph(A),sul1,sul2,tet(B)	gyrA(p.D87N,p.S83L),parC(p.S80I),parE(p.S458T)	qacE,sitABCD
+test	NA	NA	NA	447	4812883	159745	28438	47	NA	NA	4737400	50.8	Escherichia coli	Escherichia coli#1 ST44 [adk:10 fumC:11 gyrB:4 icd:8 mdh:8 purA:8 recA:7],Escherichia coli#2 ST2 [dinB:8 icdA:2 pabB:7 polB:3 putP:7 trpA:1 trpB:4 uidA:2]	aminocyclitol,aminoglycoside,amphenicol,beta-lactam,folate pathway antagonist,macrolide,quinolone,tetracycline	amikacin,amoxicillin,amoxicillin+clavulanic acid,ampicillin,ampicillin+clavulanic acid,azithromycin,aztreonam,cefepime,cefotaxime,ceftazidime,ceftriaxone,chloramphenicol,ciprofloxacin,dibekacin,doxycycline,erythromycin,fluoroquinolone,gentamicin,minocycline,nalidixic acid,netilmicin,piperacillin,piperacillin+tazobactam,sisomicin,spectinomycin,spiramycin,streptomycin,sulfamethoxazole,telithromycin,tetracycline,ticarcillin,tobramycin,trimethoprim	benzylkonium chloride,cetylpyridinium chloride,chlorhexidine,ethidium bromide,hydrogen peroxide	AslA,anr,csgA,fdeC,fimH,gad,hha,hlyE,iucC,iutA,nlpI,sitA,terC,traJ,traT,yehA,yehB,yehC,yehD,yghJ	Col(MG828),Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII	IncF RST[F31:A4:B1]		aac(3)-IIa,aac(6')-Ib-cr,aadA5,aph(3'')-Ib,aph(6)-Id,blaCTX-M-15,blaOXA-1,catB3,dfrA17,mph(A),sul1,sul2,tet(B)	gyrA(p.D87N,p.S83L),parC(p.S80I),parE(p.S458T)	qacE,sitABCD