mScarlet fluorescence lifetime reports lysosomal pH quantitatively

Permanent version (cite as):

A scientific publication that describes a new approach for measuring lysosomal pH, based on the fluorescence lifetime of mScarlet. This repository hosts everything you need to reproduce our results. Read the publication here: https://jlazzaridean.github.io/mScarlet_lifetime_reports_pH (hosted via Julia Lazzari-Dean's personal GitHub account) or here: https://andrewgyork.github.io/mScarlet_lifetime_reports_pH (hosted via Andrew G. York's personal GitHub account)

This repository is intended to hold a (mostly) self-contained scientific publication. It contains:

• HTML, javascript, CSS, and small images (index.html, appendix.html, and the javascript, stylesheets, figures and images directories)
• A (limited) PDF version of the publication; note that this does not include animated/interactive figures.
• Code which produces figures (in the figures directory). You can run and modify this code to verify and explore our results. See figure_generation/README.txt for instructions how to run the figure generation code.

Some files aren't suitable for version control, (e.g. raw data, minimally pre-processed data, etc). These are stored in a dedicated repository:

• Source data https://doi.org/10.5281/zenodo.6115684

Hopefully this makes it easier to manage big, non-text files without risking the faithful version control of small, important text-based files stored here.

This work is licensed under a Creative Commons Attribution 4.0 International License.