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1. napari_interactive_image_cropping napari_interactive_image_cropping Public

   Interactively crop fluorescence microscopy 2D/3D time-lapse images.

   Jupyter Notebook

2. fiji_jython_useful_functions fiji_jython_useful_functions Public

   Useful functions and snippets for FIJI scripting using Jython

   Python 1

3. bioimage_analysis_defragmentation_oct2022 bioimage_analysis_defragmentation_oct2022 Public

   Cytoplasm segmentation with no DAPI

   Jupyter Notebook

4. ipf_howtoguides ipf_howtoguides Public

   Forked from mpicbg-scicomp/ipf_howtoguides

   Repo for webpage with How-To guides for image processing, created by the SCF from the MPI-CBG Dresden.

   Ruby 1

5. coacervates_image_classification coacervates_image_classification Public

   Classify 2D high-content screening coacervates images based on texture and other features into 3 classes.

   Jupyter Notebook

6. Open images using bio-formats API (r... Open images using bio-formats API (run with FIJI)

   1

   from ij import IJ, ImagePlus

   2

   from loci.plugins import BF

   3

   from loci.formats import ImageReader, FilePattern

   4

   from loci.formats import MetadataTools

   5

   from loci.plugins.prefs import OptionsList