Compression feature #127
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: h5bench (HDF5 1.14.1) | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| h5bench: | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: hpcio/hdf5-1.14.1 | |
| timeout-minutes: 60 | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Configuration | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "Github CI" | |
| - name: Dependencies | |
| run: | | |
| # VOL-ASYNC | |
| git clone --recursive https://github.com/hpc-io/vol-async.git --branch v1.7 /opt/vol-async | |
| - name: Build Argobots | |
| run: | | |
| export ABT_DIR=/opt/argobots | |
| cd /opt/vol-async/argobots | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make -j 2 | |
| make install | |
| - name: Build VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| cd $ASYNC_DIR | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=$ASYNC_DIR -DCMAKE_PREFIX_PATH=$HDF5_DIR -DENABLE_WRITE_MEMCPY=ON | |
| make | |
| make install | |
| - name: Test VOL-ASYNC | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export HDF5_HOME=$HDF5_DIR | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_DIR/lib:$HDF5_DIR/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$ASYNC_DIR/include" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| cd $ASYNC_DIR/build | |
| export LD_PRELOAD=$ASYNC_DIR/lib/libh5async.so:$ABT_DIR/lib/libabt.so:$HDF5_DIR/lib/libhdf5.so | |
| ctest | |
| - name: Build h5bench SYNC | |
| run: | | |
| export HDF5_HOME=/opt/hdf5 | |
| mkdir build-sync | |
| cd build-sync | |
| cmake .. \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| ldconfig | |
| - name: Build h5bench ASYNC | |
| run: | | |
| export HDF5_HOME=/opt/hdf5 | |
| export ABT_HOME=/opt/argobots | |
| export ASYNC_HOME=/opt/vol-async | |
| export LD_LIBRARY_PATH=$ASYNC_HOME/lib:$HDF5_HOME/lib:$ABT_HOME/lib:$LD_LIBRARY_PATH | |
| mkdir build-async | |
| cd build-async | |
| cmake .. \ | |
| -DWITH_ASYNC_VOL:BOOL=ON \ | |
| -DCMAKE_C_FLAGS="-I$ASYNC_HOME/include -L$ASYNC_HOME/lib" \ | |
| -DH5BENCH_ALL=ON | |
| make -j 2 | |
| sudo make install | |
| ldconfig | |
| - name: Test h5bench SYNC write/read | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-read-contig-1d-small.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) strided (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-strided.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig.json | |
| - name: Test h5bench SYNC write 1D contiguous (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-interleaved.json | |
| - name: Test h5bench SYNC write 1D interleaved (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-contig.json | |
| - name: Test h5bench SYNC write 1D interleaved (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-interleaved.json | |
| - name: Test h5bench SYNC write 2D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig.json | |
| - name: Test h5bench SYNC write 2D contiguous (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-interleaved.json | |
| - name: Test h5bench SYNC write 2D interleaved (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-contig.json | |
| - name: Test h5bench SYNC write 2D interleaved (memory) interleaved (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-interleaved.json | |
| - name: Test h5bench SYNC write 3D contiguous (memory) contiguous (file) | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-3d-contig-contig.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) partial | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-partial.json | |
| - name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) strided | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-strided.json | |
| - name: Test h5bench SYNC read 2D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC read 3D contiguous (memory) contiguous (file) full | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench SYNC write unlimited | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-write-unlimited.json | |
| - name: Test h5bench SYNC overwrite | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-overwrite.json | |
| - name: Test h5bench SYNC append | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-append.json | |
| - name: Test h5bench SYNC exerciser | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-exerciser.json | |
| - name: Test h5bench SYNC metadata | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-metadata.json | |
| - name: Test h5bench SYNC amrex | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-amrex.json | |
| - name: Test h5bench SYNC openpmd | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-openpmd.json | |
| - name: Test h5bench SYNC e3sm | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-e3sm.json | |
| - name: Test h5bench SYNC macsio | |
| run: | | |
| export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH | |
| cd build-sync | |
| ./h5bench --debug --abort-on-failure ../samples/sync-macsio.json | |
| - name: Test h5bench ASYNC write/read | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-read-contig-1d-small.json | |
| ./h5bench --debug --abort-on-failure ../samples/async-write-read-contig-1d-small.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) strided (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-strided.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-strided.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig.json | |
| - name: Test h5bench ASYNC write 1D contiguous (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-interleaved.json | |
| - name: Test h5bench ASYNC write 1D interleaved (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-interleaved-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-interleaved-contig.json | |
| - name: Test h5bench ASYNC write 1D interleaved (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-interleaved-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-interleaved-interleaved.json | |
| - name: Test h5bench ASYNC write 2D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig.json | |
| - name: Test h5bench ASYNC write 2D contiguous (memory) interleaved (file) | |
| run: | | |
| current="$PWD" | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-interleaved.json | |
| - name: Test h5bench ASYNC write 2D interleaved (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-interleaved-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-interleaved-contig.json | |
| - name: Test h5bench ASYNC write 2D interleaved (memory) interleaved (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-interleaved-interleaved.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-interleaved-interleaved.json | |
| - name: Test h5bench ASYNC write 3D contiguous (memory) contiguous (file) | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-3d-contig-contig.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-3d-contig-contig.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) partial | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-partial.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-partial.json | |
| - name: Test h5bench ASYNC read 1D contiguous (memory) contiguous (file) strided | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-1d-contig-contig-read-strided.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-1d-contig-contig-read-strided.json | |
| - name: Test h5bench ASYNC read 2D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC read 3D contiguous (memory) contiguous (file) full | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-write-2d-contig-contig-read-full.json | |
| ./h5bench --debug --abort-on-failure --validate-mode ../samples/async-write-2d-contig-contig-read-full.json | |
| - name: Test h5bench ASYNC amrex | |
| run: | | |
| export HDF5_DIR=/opt/hdf5 | |
| export ABT_DIR=/opt/argobots | |
| export ASYNC_DIR=/opt/vol-async | |
| export HDF5_ASYNC_MAX_MEM_MB=1024 | |
| cd build-async | |
| python3 ../samples/update.py ../samples/async-amrex.json | |
| ./h5bench --debug --abort-on-failure ../samples/async-amrex.json | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Upload artifact | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: test | |
| path: build*/storage/**/std* | |
| retention-days: 5 |