Keep the initial call to BiotSavart #255
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| # This file is based on examples in | |
| # https://docs.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions | |
| # Note that all the "sudo" commands here appear to cause a warning message | |
| # "sudo: setrlimit(RLIMIT_CORE): operation not permitted" | |
| # This appears to be a known harmless annoyance: | |
| # https://gitlab.alpinelinux.org/alpine/aports/-/issues/11122 | |
| name: Tests with no XSIMD | |
| on: | |
| push: | |
| branches-ignore: [master] | |
| tags-ignore: [v*] | |
| pull_request: | |
| branches-ignore: [master] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| NO_XSIMD: 1 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.8.15] # To sync with coveragerc use 3 level | |
| steps: | |
| # First print out lots of information. We do this in separate | |
| # "name" blocks because otherwise the output gets mixed together | |
| # in the github actions log. | |
| - name: Print user and group id | |
| run: | | |
| set -ex | |
| id | |
| - name: PWD | |
| run: | | |
| set -ex | |
| pwd | |
| - name: ls -l | |
| run: | | |
| set -ex | |
| ls -l | |
| - name: apt-get stuff needed for libstell and vmec | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential gfortran openmpi-bin libopenmpi-dev libnetcdf-dev libnetcdff-dev liblapack-dev libscalapack-mpi-dev libhdf5-dev libhdf5-serial-dev git m4 libfftw3-dev libboost-all-dev libopenblas-dev | |
| - uses: actions/checkout@v3 | |
| - name: Fetch all history for all tags | |
| run: git fetch --all --tags --prune --unshallow | |
| - name: ls -l again | |
| run: | | |
| set -ex | |
| ls -l | |
| pwd | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: which python3 after python setup | |
| run: which python3 | |
| - name: which pip after python setup | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip --version | |
| - name: env after adding python | |
| run: env | |
| - name: Install python dependencies | |
| run: | | |
| sudo apt-get install graphviz graphviz-dev | |
| pip install wheel numpy scipy f90nml h5py scikit-build cmake qsc sympy pyevtk matplotlib ninja plotly networkx pygraphviz | |
| - name: Install booz_xform | |
| run: pip install -v git+https://github.com/hiddenSymmetries/booz_xform | |
| - name: Install virtual_casing | |
| run: pip install -v git+https://github.com/hiddenSymmetries/virtual-casing | |
| - name: ls in /usr/lib/x86_64-linux-gnu | |
| run: ls -l /usr/lib/x86_64-linux-gnu | |
| - name: Add to LD_LIBRARY_PATH so scalapack etc can be found | |
| run: echo "LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu" >> $GITHUB_ENV | |
| - name: env after adding to LD_LIBRARY_PATH | |
| run: env | |
| - name: Install simsopt package | |
| run: env CMAKE_BUILD_TYPE=Debug pip install -v .[MPI] | |
| - name: Verify that importing simsopt does not automatically initialize MPI | |
| run: ./tests/verify_MPI_not_initialized.py | |
| - name: Run examples as part of integrated tests | |
| run: | | |
| cd examples | |
| ./run_serial_examples | |
| ./run_parallel_examples | |
| - name: Run tests on 1 process | |
| run: | | |
| python -m unittest discover -t tests -v -s tests/field | |
| python -m unittest discover -t tests -v -s tests/geo | |
| python -m unittest discover -t tests -v -s tests/objectives | |
| - name: Run MPI tests | |
| run: | | |
| mpiexec -n 2 python -m unittest discover -k "mpi" -s tests -v | |