Release 3.13 (#1074)

* Update CHANGELOG.md * Update release.md * updates * Update .github/PULL_REQUEST_TEMPLATE/release.md Co-authored-by: Steph Prince <[email protected]> * Update pyproject.toml --------- Co-authored-by: Steph Prince <[email protected]>
hdmf-dev · Mar 20, 2024 · a6f51ff · a6f51ff
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diff --git a/.github/PULL_REQUEST_TEMPLATE/release.md b/.github/PULL_REQUEST_TEMPLATE/release.md
@@ -10,7 +10,7 @@ Prepare for release of HDMF [version]
   and any other locations as needed
 - [ ] Update `pyproject.toml` as needed
 - [ ] Update `README.rst` as needed
-- [ ] Update `src/hdmf/common/hdmf-common-schema` submodule as needed. Check the version number and commit SHA manually
+- [ ] Update `src/hdmf/common/hdmf-common-schema` submodule as needed. Check the version number and commit SHA manually. Make sure we are using the latest release and not the latest commit on the `main` branch.
 - [ ] Update changelog (set release date) in `CHANGELOG.md` and any other docs as needed
 - [ ] Run tests locally including gallery tests, and inspect all warnings and outputs
   (`pytest && python test_gallery.py`)

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,6 +1,6 @@
 # HDMF Changelog
 
-## HDMF 3.13.0 (Upcoming)
+## HDMF 3.13.0 (March 20, 2024)
 
 ### Enhancements
 - Added docs page that lists limitations of support for the HDMF specification language. @rly [#1069](https://github.com/hdmf-dev/hdmf/pull/1069)

diff --git a/pyproject.toml b/pyproject.toml
@@ -21,6 +21,7 @@ classifiers = [
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "License :: OSI Approved :: BSD License",
     "Development Status :: 5 - Production/Stable",
     "Operating System :: OS Independent",

diff --git a/requirements-opt.txt b/requirements-opt.txt
@@ -1,8 +1,8 @@
 # pinned dependencies that are optional. used to reproduce an entire development environment to use HDMF
-tqdm==4.66.1
-zarr==2.16.1
-linkml-runtime==1.6.0; python_version >= "3.9"
-schemasheets==0.1.24; python_version >= "3.9"
-oaklib==0.5.20; python_version >= "3.9"
-pydantic==1.10.13  # linkml-runtime 1.6.0 and related packages require pydantic<2
+tqdm==4.66.2
+zarr==2.17.1
+linkml-runtime==1.7.3; python_version >= "3.9"
+schemasheets==0.2.1; python_version >= "3.9"
+oaklib==0.5.31; python_version >= "3.9"
+pydantic==2.6.4  # linkml-runtime 1.6.0 and related packages require pydantic<2
 pyyaml==6.0.1; python_version >= "3.9"
diff --git a/src/hdmf/common/hdmf-common-schema b/src/hdmf/common/hdmf-common-schema