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update cmake to work with add_subdirectory #563

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update cmake to work with add_subdirectory

update cmake to work with add_subdirectory #563

Workflow file for this run

.github/workflows/python.yml at e3fd88d
name: Python CI
on:
push:
branches: [ '*' ]
pull_request:
branches: [ '*' ]
jobs:
ubuntu_14:
name: pyslow5 Ubuntu_14
runs-on: ubuntu-20.04
container: ubuntu:14.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip wget && wget --no-check-certificate https://bootstrap.pypa.io/pip/3.4/get-pip.py && python3 get-pip.py && pip3 install setuptools cython "numpy>=1.13.3,<1.15.0" --user
- name: env
run: lsb_release -a && ldd --version && gcc --version && g++ --version && python3 --version
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
ubuntu_16:
name: pyslow5 Ubuntu 16
runs-on: ubuntu-20.04
container: ubuntu:16.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: apt-get update && apt-get install -y lsb-release zlib1g-dev python3-pip python3-setuptools && pip3 install cython "numpy>=1.14.5,<1.19.0"
- name: env
run: lsb_release -a && ldd --version && gcc --version && g++ --version && python3 --version
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
pyslow5_ubuntu_18:
name: pyslow5 Ubuntu 18
runs-on: ubuntu-20.04
container: ubuntu:18.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: apt-get update && apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
ubuntu_20:
name: pyslow5 Ubuntu 20
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
ubuntu_22:
name: pyslow5 Ubuntu 22
runs-on: ubuntu-22.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
ubuntu_24:
name: pyslow5 Ubuntu 24
runs-on: ubuntu-24.04
steps:
- uses: actions/checkout@v2
- name: install packages
run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install --break-system-packages setuptools cython numpy
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
arm64:
name: pyslow5 ubuntu arm
runs-on: ubuntu-latest
steps:
- run: docker run --rm --privileged multiarch/qemu-user-static:register --reset
- uses: docker://multiarch/ubuntu-core:arm64-bionic
with:
args: 'uname -a'
- uses: actions/checkout@v1
- uses: docker://multiarch/ubuntu-core:arm64-bionic
with:
args: >
bash -c "apt-get update &&
apt-get install -y zlib1g-dev gcc make python3 python3-pip python3-numpy &&
pip3 install setuptools cython &&
ldd --version && gcc --version && python3 --version &&
make pyslow5 &&
python3 -m unittest -v python/test.py"
os_x_11:
name: pyslow5 mac os 11
runs-on: macos-11
steps:
- uses: actions/checkout@v2
- name: install packages
run: pip3 install numpy setuptools
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
os_x_12:
name: pyslow5 mac os 12
runs-on: macos-12
steps:
- uses: actions/checkout@v2
- name: install packages
run: pip3 install numpy setuptools
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
os_x_13:
name: pyslow5 mac os 13
runs-on: macos-13
steps:
- uses: actions/checkout@v2
- name: install packages
run: pip3 install numpy setuptools
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py
os_x_14:
name: pyslow5 mac os 14
runs-on: macos-14
steps:
- uses: actions/checkout@v2
- name: install packages
run: pip3 install numpy setuptools --break-system-packages
- name: build
run: make pyslow5
- name: test
run: python3 -m unittest -v python/test.py