try to fix snake workflow, possibly due to outdated pip #531
Workflow file for this run
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| name: Python CI | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| pull_request: | |
| branches: [ '*' ] | |
| jobs: | |
| ubuntu_14: | |
| name: pyslow5 Ubuntu_14 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:14.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install --upgrade pip && pip3 install setuptools cython "numpy>=1.13.3,<1.15.0" --user | |
| - name: env | |
| run: lsb_release -a && ldd --version && gcc --version && g++ --version && python3 --version | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py | |
| ubuntu_16: | |
| name: pyslow5 Ubuntu 16 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:16.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: apt-get update && apt-get install -y lsb-release zlib1g-dev python3-pip python3-setuptools && pip3 install cython "numpy>=1.14.5,<1.19.0" | |
| - name: env | |
| run: lsb_release -a && ldd --version && gcc --version && g++ --version && python3 --version | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py | |
| pyslow5_ubuntu_18: | |
| name: pyslow5 Ubuntu 18 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:18.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: apt-get update && apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py | |
| ubuntu_20: | |
| name: pyslow5 Ubuntu 20 | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: sudo apt-get update && sudo apt-get install -y zlib1g-dev python3-pip && pip3 install setuptools cython numpy | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py | |
| arm64: | |
| name: pyslow5 ubuntu arm | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: docker run --rm --privileged multiarch/qemu-user-static:register --reset | |
| - uses: docker://multiarch/ubuntu-core:arm64-bionic | |
| with: | |
| args: 'uname -a' | |
| - uses: actions/checkout@v1 | |
| - uses: docker://multiarch/ubuntu-core:arm64-bionic | |
| with: | |
| args: > | |
| bash -c "apt-get update && | |
| apt-get install -y zlib1g-dev gcc make python3 python3-pip python3-numpy && | |
| pip3 install setuptools cython && | |
| ldd --version && gcc --version && python3 --version && | |
| make pyslow5 && | |
| python3 -m unittest -v python/test.py" | |
| os_x_11: | |
| name: pyslow5 mac os | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: pip3 install numpy setuptools | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py | |
| os_x_12: | |
| name: pyslow5 mac os | |
| runs-on: macos-12 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: pip3 install numpy setuptools | |
| - name: build | |
| run: make pyslow5 | |
| - name: test | |
| run: python3 -m unittest -v python/test.py |