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EHR Compatibility #7

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EHR Compatibility #7

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Commits on May 4, 2020

  1. Moved some files to use via command line

    @meliao
    meliao committed May 4, 2020
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  2. Added gitignore; removed error handling

    @meliao
    meliao committed May 4, 2020
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  3. load_withdrawals should now accept command line args

    @meliao
    meliao committed May 4, 2020
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  4. load_codings should now accept command line parameters

    @meliao
    meliao committed May 4, 2020
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  5. Printing log messages for pheno query

    @meliao
    meliao committed May 4, 2020
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  6. More logging messages

    @meliao
    meliao committed May 4, 2020
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Commits on May 5, 2020

  1. Added one logging message

    @meliao
    meliao committed May 5, 2020
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Commits on May 15, 2020

  1. First commit for pg_clinical loading

    @meliao
    meliao committed May 15, 2020
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  2. Minor changes from test env

    @meliao
    meliao committed May 15, 2020
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  3. Changes to primary care loading

    @meliao
    meliao committed May 15, 2020
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  4. Need to drop duplicates

    @meliao
    meliao committed May 15, 2020
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  5. Need to segment by service provider

    @meliao
    meliao committed May 15, 2020
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  6. I did not think there would be so much data cleaning

    @meliao
    meliao committed May 15, 2020
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Commits on May 17, 2020

  1. I will refactor later

    @meliao
    meliao committed May 17, 2020
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  2. Found small errors in testing environment. Now for uploading scripts … 

    …data
    @meliao
    meliao committed May 17, 2020
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  3. PG scripts data parsing complete

    @meliao
    meliao committed May 17, 2020
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  4. Changes from bionimbus

    @meliao
    meliao committed May 17, 2020
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Commits on May 19, 2020

  1. Added gp_registrations loading

    @meliao
    meliao committed May 19, 2020
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  2. Changes from bionimbus

    @meliao
    meliao committed May 19, 2020
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  3. Made some changes before pulling. Whoops

    @meliao
    meliao committed May 19, 2020
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  4. Merge branch 'EHR_loading' of github.com:meliao/ukbrest into EHR_loading

    @meliao
    meliao committed May 19, 2020
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  5. Support for Hospital Inpatient records

    @meliao
    meliao committed May 19, 2020
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  6. Changes from bionimus

    @meliao
    meliao committed May 19, 2020
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  7. Changes

    @meliao
    meliao committed May 19, 2020
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  8. Refactoring

    @meliao
    meliao committed May 19, 2020
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Commits on May 20, 2020

  1. Headers for EHR test files

    @meliao
    meliao committed May 20, 2020
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Commits on May 21, 2020

  1. Commit before deleting incorrect app.py and load_data.py files

    @meliao
    meliao committed May 21, 2020
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  2. Need to check out main to see how error handling works

    @meliao
    meliao committed May 21, 2020
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Commits on May 22, 2020

  1. Beginning to write tests for EHR querying

    @meliao
    meliao committed May 22, 2020
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  2. More work on testing setup

    @meliao
    meliao committed May 22, 2020
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  3. Almost finished; need to update and test dockerfile

    @meliao
    meliao committed May 22, 2020
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Commits on May 27, 2020

  1. Updated environment and Dockerfile

    @meliao
    meliao committed May 27, 2020
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  2. Changed enviornment file for conda formatting

    @meliao
    meliao committed May 27, 2020
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  3. Changes to environment file

    @meliao
    meliao committed May 27, 2020
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Commits on May 29, 2020

  1. Changes from bionimbus

    @meliao
    meliao committed May 29, 2020
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Commits on Jun 2, 2020

  1. Now chunking the primary care data loading, and abandoning hopes of a… 

    … primary key
    @meliao
    meliao committed Jun 2, 2020
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  2. Nonnull row drop warning no longer at chunk level

    @meliao
    meliao committed Jun 2, 2020
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Commits on Jun 15, 2020

  1. Changes from bionimbus

    @meliao
    meliao committed Jun 15, 2020
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Commits on Jul 17, 2020

  1. Merge pull request #5 from meliao/master 

    Addition of EHR loading capabilities
    @meliao
    meliao authored Jul 17, 2020
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Commits on Jul 22, 2020

  1. Merge pull request #6 from meliao/EHR_loading 

    EHR Loading development
    @meliao
    meliao authored Jul 22, 2020
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Commits on Aug 7, 2020

  1. Fixed sql schema problems

    @meliao
    meliao committed Aug 7, 2020
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  2. Updated travis CI config file with new BGEN installation

    @meliao
    meliao committed Aug 7, 2020
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Commits on Aug 21, 2020

  1. Added resources to setup_app in wsgi script

    @meliao
    meliao committed Aug 21, 2020
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Commits on Jul 12, 2021

  1. Merge branch 'master' into EHR_development 

    # Conflicts:
#	.gitignore
#	.travis.yml
    @miltondp
    miltondp committed Jul 12, 2021
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