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New Galaxy tool wrapper for CELESTA #87

Merged
merged 23 commits into from
Aug 28, 2024
Merged

New Galaxy tool wrapper for CELESTA #87

merged 23 commits into from
Aug 28, 2024

Commits on Feb 28, 2024

  1. CELESTA initial commit

    @CameronFRWatson
    CameronFRWatson committed Feb 28, 2024
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  2. add r-anndata, r-optparse, r-janitor to docker dependencies

    @CameronFRWatson
    CameronFRWatson committed Feb 28, 2024
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  3. Building up XML logic for CELESTA tool run modes

    @CameronFRWatson
    CameronFRWatson committed Feb 28, 2024
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Commits on Mar 1, 2024

  1. add repeat plot param to assign_cells mode, and other small param cha… 

    …nges
    @CameronFRWatson
    CameronFRWatson committed Mar 1, 2024
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  2. Changes to overall R code organization

    @CameronFRWatson
    CameronFRWatson committed Mar 1, 2024
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Commits on Mar 15, 2024

  1. finalize celesta test data

    @CameronFRWatson
    CameronFRWatson committed Mar 15, 2024
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  2. change r-anndata to anndataR in celesta deps

    @CameronFRWatson
    CameronFRWatson committed Mar 15, 2024
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  3. CELESTA tool wrapper development

    @CameronFRWatson
    CameronFRWatson committed Mar 15, 2024
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Commits on Mar 29, 2024

  1. add expression threshold test data files

    @CameronFRWatson
    CameronFRWatson committed Mar 29, 2024
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  2. add advanced params to CELESTA assign_cells runmode

    @CameronFRWatson
    CameronFRWatson committed Mar 29, 2024
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  3. finalize CELESTA plot_expression run mode

    @CameronFRWatson
    CameronFRWatson committed Mar 29, 2024
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  4. Add CELESTA help and rm unused rep param

    @CameronFRWatson
    CameronFRWatson committed Mar 29, 2024
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Commits on Jun 26, 2024

  1. Merge branch 'main' into celesta

    @CameronFRWatson
    CameronFRWatson committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. small fixes

    @CameronFRWatson
    CameronFRWatson committed Jun 27, 2024
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Commits on Aug 26, 2024

  1. move requirements to dockerfile

    @CameronFRWatson
    CameronFRWatson committed Aug 26, 2024
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Commits on Aug 27, 2024

  1. Final changes to celesta wrapper, test-data, docker container

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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  2. Merge branch 'main' into celesta

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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  3. address lintr errors

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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  4. final lintr fixes

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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  5. final final lintr fix

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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  6. Update tools/celesta/celesta.xml: quotes around input 

    Co-authored-by: Björn Grüning <[email protected]>
    @CameronFRWatson @bgruening
    CameronFRWatson and bgruening authored Aug 27, 2024
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  7. Update tools/celesta/celesta.xml: Fix command block formatting 

    Co-authored-by: Björn Grüning <[email protected]>
    @CameronFRWatson @bgruening
    CameronFRWatson and bgruening authored Aug 27, 2024
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  8. remove hacky && fix from command block

    @CameronFRWatson
    CameronFRWatson committed Aug 27, 2024
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