tools_intersect_known_variants.cwl

Documentation for intersect_known_variants.cwl

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Overview

Intersect passing validated variants and passing pipeline variants for use in pvacseq

Docker Requirement

mgibio/bcftools-cwl:1.12

Inputs

Name	Label	Description	Type	Secondary Files
vcf		Pipeline variants to be intersected with validated variants, if the vcf is present	File	['.tbi']
validated_variants		A vcf of previously discovered variants; if not provided, this tool does nothing but rename the input vcf	File?	['.tbi']

Outputs

Name	Label	Description	Type	Secondary Files
validated_and_pipeline_vcf			File	['.tbi']