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update bcftools version 1.12 #1027

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merged 1 commit into from
Jun 9, 2021
Merged

update bcftools version 1.12 #1027

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2 changes: 1 addition & 1 deletion definitions/tools/bcftools_merge.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ requirements:
- class: ResourceRequirement
ramMin: 4000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"

inputs:
force_merge:
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2 changes: 1 addition & 1 deletion definitions/tools/filter_known_variants.cwl
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Expand Up @@ -6,7 +6,7 @@ label: "Adds an INFO tag (VALIDATED) flagging variants in the pipeline vcf prese

requirements:
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: ResourceRequirement
ramMin: 8000
- class: InitialWorkDirRequirement
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2 changes: 1 addition & 1 deletion definitions/tools/filter_sv_vcf_depth.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ requirements:
- class: ResourceRequirement
ramMin: 4000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: InitialWorkDirRequirement
listing:
- entryname: "filter_sv_vcf_depth.sh"
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2 changes: 1 addition & 1 deletion definitions/tools/filter_sv_vcf_read_support.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ requirements:
- class: ResourceRequirement
ramMin: 4000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: InitialWorkDirRequirement
listing:
- entryname: "filter_sv_vcf_read_support.sh"
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2 changes: 1 addition & 1 deletion definitions/tools/filter_sv_vcf_size.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ requirements:
- class: ResourceRequirement
ramMin: 4000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: InitialWorkDirRequirement
listing:
- entryname: "filter_sv_vcf_size.sh"
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2 changes: 1 addition & 1 deletion definitions/tools/intersect_known_variants.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ label: "Intersect passing validated variants and passing pipeline variants for u

requirements:
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: ResourceRequirement
ramMin: 8000
- class: InitialWorkDirRequirement
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2 changes: 1 addition & 1 deletion definitions/tools/merge_vcf.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ label: "vcf merge"
baseCommand: ["/opt/bcftools/bin/bcftools", "concat"]
requirements:
- class: DockerRequirement
dockerPull: mgibio/bcftools-cwl:1.3.1
dockerPull: mgibio/bcftools-cwl:1.12
- class: ResourceRequirement
ramMin: 4000
arguments:
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2 changes: 1 addition & 1 deletion definitions/tools/remove_end_tags.cwl
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Expand Up @@ -13,7 +13,7 @@ requirements:
- class: ResourceRequirement
ramMin: 4000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.3.1"
dockerPull: "mgibio/bcftools-cwl:1.12"
inputs:
vcf:
type: File
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2 changes: 1 addition & 1 deletion definitions/tools/replace_vcf_sample_name.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ requirements:
- class: ResourceRequirement
ramMin: 8000
- class: DockerRequirement
dockerPull: "mgibio/bcftools-cwl:1.9"
dockerPull: "mgibio/bcftools-cwl:1.12"
- class: InitialWorkDirRequirement
listing:
- entryname: "rename_sample.sh"
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