PANTHER19 test branch for geneontology/go-site#2364

Jenkinsfile

@@ -17,7 +17,7 @@ pipeline {
 	///
 
 	// The branch of geneontology/go-site to use.
-	TARGET_GO_SITE_BRANCH = 'master'
+	TARGET_GO_SITE_BRANCH = 'issue-2364-panther-19'
 	// The branch of geneontology/go-stats to use.
 	TARGET_GO_STATS_BRANCH = 'master'
 	// The branch of go-ontology to use.
@@ -32,13 +32,13 @@ pipeline {
 	TARGET_NOCTUA_MODELS_BRANCH = 'master'
 	// The people to call when things go bad. It is a comma-space
 	// "separated" string.
-	TARGET_ADMIN_EMAILS = '[email protected],[email protected],[email protected]'
-	TARGET_SUCCESS_EMAILS = '[email protected],[email protected],[email protected],[email protected]'
-	TARGET_RELEASE_HOLD_EMAILS = '[email protected],[email protected],[email protected],[email protected],[email protected]'
+	TARGET_ADMIN_EMAILS = '[email protected]'
+	TARGET_SUCCESS_EMAILS = '[email protected]'
+	TARGET_RELEASE_HOLD_EMAILS = '[email protected]'
 	// The file bucket(/folder) combination to use.
-	TARGET_BUCKET = 'go-data-product-experimental'
+	TARGET_BUCKET = 'null'
 	// The URL prefix to use when creating site indices.
-	TARGET_INDEXER_PREFIX = 'http://experimental.geneontology.io'
+	TARGET_INDEXER_PREFIX = 'null'
 	// This variable should typically be 'TRUE', which will cause
 	// some additional basic checks to be made. There are some
 	// very exotic cases where these check may need to be skipped
@@ -62,35 +62,35 @@ pipeline {
 	/// PANTHER/PAINT metadata.
 	///
 
-	PANTHER_VERSION = '17.0'
+	PANTHER_VERSION = '19.0'
 
 	///
 	/// Application tokens.
 	///
 
 	// The Zenodo concept ID to use for releases (and occasionally
 	// master testing).
-	ZENODO_ARCHIVE_CONCEPT = '1170314'
+	ZENODO_ARCHIVE_CONCEPT = 'null'
 	// Distribution ID for the AWS CloudFront for this branch,
 	// used soley for invalidations. Versioned release does not
 	// need this as it is always a new location and the index
 	// upload already has an invalidation on it. For current,
 	// snapshot, and experimental.
-	AWS_CLOUDFRONT_DISTRIBUTION_ID = 'E2CDVG5YT5R4K4'
-	AWS_CLOUDFRONT_RELEASE_DISTRIBUTION_ID = 'E2HF1DWYYDLTQP'
+	AWS_CLOUDFRONT_DISTRIBUTION_ID = 'null'
+	AWS_CLOUDFRONT_RELEASE_DISTRIBUTION_ID = 'null'
 
 	///
 	/// Ontobio Validation
 	///
-	VALIDATION_ONTOLOGY_URL="http://skyhook.berkeleybop.org/master/ontology/go.json"
+	VALIDATION_ONTOLOGY_URL="http://skyhook.berkeleybop.org/go-site-2364-panther-19/ontology/go.json"
 
 	///
 	/// Minerva input.
 	///
 
 	// Minerva operating profile.
 	MINERVA_INPUT_ONTOLOGIES = [
-	    "http://skyhook.berkeleybop.org/master/ontology/extensions/go-lego.owl"
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/ontology/extensions/go-lego.owl"
 	].join(" ")
 
 	///
@@ -101,19 +101,37 @@ pipeline {
 	GOLR_SOLR_MEMORY = "128G"
 	GOLR_LOADER_MEMORY = "192G"
 	GOLR_INPUT_ONTOLOGIES = [
-	    "http://skyhook.berkeleybop.org/master/ontology/extensions/go-amigo.owl"
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/ontology/extensions/go-amigo.owl"
 	].join(" ")
 	GOLR_INPUT_GAFS = [
-	    //"http://skyhook.berkeleybop.org/master/products/upstream_and_raw_data/paint_other.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/goa_chicken.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/goa_chicken_complex.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/goa_uniprot_all_noiea.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/mgi.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/pombase.gaf.gz",
-	    "http://skyhook.berkeleybop.org/master/annotations/wb.gaf.gz"
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/products/upstream_and_raw_data/paint_other.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/cgd.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/dictybase.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/ecocyc.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/fb.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/genedb_lmajor.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/genedb_tbrucei.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/genedb_pfalciparum.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_chicken.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_cow.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_dog.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_human.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_pig.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/goa_uniprot_all_noiea.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/japonicusdb.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/mgi.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/pombase.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/pseudocap.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/rgd.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/sgd.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/sgn.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/tair.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/wb.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/xenbase.gaf.gz",
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/annotations/zfin.gaf.gz"
 	].join(" ")
 	GOLR_INPUT_PANTHER_TREES = [
-	    "http://skyhook.berkeleybop.org/master/products/panther/arbre.tgz"
+	    "http://skyhook.berkeleybop.org/go-site-2364-panther-19/products/panther/arbre.tgz"
 	].join(" ")
 
 	///
@@ -132,16 +150,16 @@ pipeline {
 	// for no rule suppression (default behavior everything), or a
 	// single value (practically speaking pretty much always
 	// "silent")
-	//GORULE_TAGS_TO_SUPPRESS="silent"
+	GORULE_TAGS_TO_SUPPRESS="silent"
 
 	// Optional. Groups to run.
-	RESOURCE_GROUPS="ecocyc goa mgi paint pseudocap wb"
+	// RESOURCE_GROUPS=""
 	// Optional. Datasets to skip within the resources that we
 	// will run (defined in the line above).
-	DATASET_EXCLUDES="goa_uniprot_gcrp goa_pdb goa_chicken_isoform goa_chicken_rna goa_cow goa_cow_complex goa_cow_isoform goa_cow_rna goa_dog goa_dog_complex goa_dog_isoform goa_dog_rna goa_human goa_human goa_human_complex goa_human_rna paint_cgd paint_dictybase paint_fb paint_goa_chicken paint_goa_human paint_other paint_rgd paint_sgd paint_tair paint_zfin"
+	// DATASET_EXCLUDES=""
 	// Optional. This acts as an override, /if/ it's grabbed (as
 	// defined above).
-	GOA_UNIPROT_ALL_URL="http://skyhook.berkeleybop.org/goa_uniprot_short.gaf.gz"
+	// GOA_UNIPROT_ALL_URL=""
 
     }
     options{