-
Notifications
You must be signed in to change notification settings - Fork 2
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
automated updated of default committed metadata in Makefile-gaf; for #…
- Loading branch information
Showing
1 changed file
with
47 additions
and
47 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,3 @@ | ||
| mirror/aspgd-20211215.gaf.gz: | ||
| wget --no-check-certificate https://go-public.s3.amazonaws.com/files/aspgd-20211215.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-aspgd.obo: mirror/aspgd-20211215.gaf.gz | ||
| gzip -dc mirror/aspgd-20211215.gaf.gz | ./gaf2obo.pl -s Aspergillus -n aspgd > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.cgd.gz: | ||
| wget --no-check-certificate http://www.candidagenome.org/download/go/gene_association.cgd.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
@@ -15,19 +7,19 @@ target/neo-cgd.obo: mirror/gene_association.cgd.gz | |
|
|
||
|
|
||
| mirror/dictyBase.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-dictybase.obo: mirror/dictyBase.gpi.gz | ||
| gzip -dc mirror/dictyBase.gpi.gz | ./gpi2obo.pl -s Ddis -n dictybase > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.ecocyc.gz: | ||
| wget --no-check-certificate https://ecoliwiki.org/gaf/gene_association.ecocyc.gz -O [email protected] && mv [email protected] $@ | ||
| mirror/18.E_coli_MG1655.goa: | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/18.E_coli_MG1655.goa -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-ecocyc.obo: mirror/gene_association.ecocyc.gz | ||
| gzip -dc mirror/gene_association.ecocyc.gz | ./gaf2obo.pl -s ecocyc -n ecocyc > [email protected] && mv [email protected] $@ | ||
| target/neo-ecocyc.obo: mirror/18.E_coli_MG1655.goa | ||
| cat mirror/18.E_coli_MG1655.goa | ./gaf2obo.pl -s Ecol -n ecocyc > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.fb.gz: | ||
|
|
@@ -39,207 +31,207 @@ target/neo-fb.obo: mirror/gene_association.fb.gz | |
|
|
||
|
|
||
| mirror/Lmajor.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/genedb/releases/latest/Lmajor/Lmajor.gaf.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/project/pathogens/as44/Lmajor.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-genedb_lmajor.obo: mirror/Lmajor.gaf.gz | ||
| gzip -dc mirror/Lmajor.gaf.gz | ./gaf2obo.pl -s genedb_lmajor -n genedb_lmajor > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/Lmajor.gaf.gz | ./gaf2obo.pl -s Lmaj -n genedb_lmajor > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/Tbruceibrucei927.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/genedb/releases/latest/Tbruceibrucei927/Tbruceibrucei927.gaf.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/project/pathogens/as44/Tbruceibrucei927.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-genedb_tbrucei.obo: mirror/Tbruceibrucei927.gaf.gz | ||
| gzip -dc mirror/Tbruceibrucei927.gaf.gz | ./gaf2obo.pl -s genedb_tbrucei -n genedb_tbrucei > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/Tbruceibrucei927.gaf.gz | ./gaf2obo.pl -s Tbru -n genedb_tbrucei > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/Pfalciparum.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/genedb/releases/latest/Pfalciparum/Pfalciparum.gaf.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate ftp://ftp.sanger.ac.uk/pub/project/pathogens/as44/Pfalciparum.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-genedb_pfalciparum.obo: mirror/Pfalciparum.gaf.gz | ||
| gzip -dc mirror/Pfalciparum.gaf.gz | ./gaf2obo.pl -s genedb_pfalciparum -n genedb_pfalciparum > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/Pfalciparum.gaf.gz | ./gaf2obo.pl -s Pfal -n genedb_pfalciparum > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_chicken.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_chicken.obo: mirror/goa_chicken.gpi.gz | ||
| gzip -dc mirror/goa_chicken.gpi.gz | ./gpi2obo.pl -s Ggal -n goa_chicken > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_chicken_complex.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_chicken_complex.obo: mirror/goa_chicken_complex.gpi.gz | ||
| gzip -dc mirror/goa_chicken_complex.gpi.gz | ./gpi2obo.pl -s Ggal -n goa_chicken_complex > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_chicken_isoform.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_chicken_isoform.obo: mirror/goa_chicken_isoform.gpi.gz | ||
| gzip -dc mirror/goa_chicken_isoform.gpi.gz | ./gpi2obo.pl -s Ggal -n goa_chicken_isoform -I > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_chicken_rna.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_chicken_rna.obo: mirror/goa_chicken_rna.gpi.gz | ||
| gzip -dc mirror/goa_chicken_rna.gpi.gz | ./gpi2obo.pl -s Ggal -n goa_chicken_rna > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_cow.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_cow.obo: mirror/goa_cow.gpi.gz | ||
| gzip -dc mirror/goa_cow.gpi.gz | ./gpi2obo.pl -s Btau -n goa_cow > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_cow_complex.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_cow_complex.obo: mirror/goa_cow_complex.gpi.gz | ||
| gzip -dc mirror/goa_cow_complex.gpi.gz | ./gpi2obo.pl -s Btau -n goa_cow_complex > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_cow_isoform.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_cow_isoform.obo: mirror/goa_cow_isoform.gpi.gz | ||
| gzip -dc mirror/goa_cow_isoform.gpi.gz | ./gpi2obo.pl -s Btau -n goa_cow_isoform -I > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_cow_rna.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_cow_rna.obo: mirror/goa_cow_rna.gpi.gz | ||
| gzip -dc mirror/goa_cow_rna.gpi.gz | ./gpi2obo.pl -s Btau -n goa_cow_rna > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_dog.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_dog.obo: mirror/goa_dog.gpi.gz | ||
| gzip -dc mirror/goa_dog.gpi.gz | ./gpi2obo.pl -s Cfam -n goa_dog > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_dog_complex.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_dog_complex.obo: mirror/goa_dog_complex.gpi.gz | ||
| gzip -dc mirror/goa_dog_complex.gpi.gz | ./gpi2obo.pl -s Cfam -n goa_dog_complex > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_dog_isoform.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_dog_isoform.obo: mirror/goa_dog_isoform.gpi.gz | ||
| gzip -dc mirror/goa_dog_isoform.gpi.gz | ./gpi2obo.pl -s Cfam -n goa_dog_isoform -I > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_dog_rna.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_dog_rna.obo: mirror/goa_dog_rna.gpi.gz | ||
| gzip -dc mirror/goa_dog_rna.gpi.gz | ./gpi2obo.pl -s Cfam -n goa_dog_rna > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_human.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_human.obo: mirror/goa_human.gpi.gz | ||
| gzip -dc mirror/goa_human.gpi.gz | ./gpi2obo.pl -s Hsap -n goa_human > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_human_complex.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_human_complex.obo: mirror/goa_human_complex.gpi.gz | ||
| gzip -dc mirror/goa_human_complex.gpi.gz | ./gpi2obo.pl -s Hsap -n goa_human_complex > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_human_isoform.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_human_isoform.obo: mirror/goa_human_isoform.gpi.gz | ||
| gzip -dc mirror/goa_human_isoform.gpi.gz | ./gpi2obo.pl -s Hsap -n goa_human_isoform -I > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_human_rna.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_human_rna.obo: mirror/goa_human_rna.gpi.gz | ||
| gzip -dc mirror/goa_human_rna.gpi.gz | ./gpi2obo.pl -s Hsap -n goa_human_rna > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_pig.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_pig.obo: mirror/goa_pig.gpi.gz | ||
| gzip -dc mirror/goa_pig.gpi.gz | ./gpi2obo.pl -s Sscr -n goa_pig > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_pig_complex.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_pig_complex.obo: mirror/goa_pig_complex.gpi.gz | ||
| gzip -dc mirror/goa_pig_complex.gpi.gz | ./gpi2obo.pl -s Sscr -n goa_pig_complex > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_pig_isoform.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_pig_isoform.obo: mirror/goa_pig_isoform.gpi.gz | ||
| gzip -dc mirror/goa_pig_isoform.gpi.gz | ./gpi2obo.pl -s Sscr -n goa_pig_isoform -I > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_pig_rna.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_pig_rna.obo: mirror/goa_pig_rna.gpi.gz | ||
| gzip -dc mirror/goa_pig_rna.gpi.gz | ./gpi2obo.pl -s Sscr -n goa_pig_rna > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_pdb.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/goa_pdb.gaf.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/goa_pdb.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_pdb.obo: mirror/goa_pdb.gaf.gz | ||
| gzip -dc mirror/goa_pdb.gaf.gz | ./gaf2obo.pl -s goa_pdb -n goa_pdb > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_uniprot_all.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_uniprot_all.obo: mirror/goa_uniprot_all.gpi.gz | ||
| gzip -dc mirror/goa_uniprot_all.gpi.gz | ./gpi2obo.pl -s goa_uniprot_all -n goa_uniprot_all > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/goa_uniprot_gcrp.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-goa_uniprot_gcrp.obo: mirror/goa_uniprot_gcrp.gpi.gz | ||
|
|
@@ -267,7 +259,7 @@ mirror/gene_association.paint_cgd.gaf.gz: | |
|
|
||
|
|
||
| target/neo-paint_cgd.obo: mirror/gene_association.paint_cgd.gaf.gz | ||
| gzip -dc mirror/gene_association.paint_cgd.gaf.gz | ./gaf2obo.pl -s paint_cgd -n paint_cgd > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/gene_association.paint_cgd.gaf.gz | ./gaf2obo.pl -s Calb -n paint_cgd > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_dictyBase.gaf.gz: | ||
|
|
@@ -283,7 +275,7 @@ mirror/gene_association.paint_ecocyc.gaf.gz: | |
|
|
||
|
|
||
| target/neo-paint_ecocyc.obo: mirror/gene_association.paint_ecocyc.gaf.gz | ||
| gzip -dc mirror/gene_association.paint_ecocyc.gaf.gz | ./gaf2obo.pl -s paint_ecocyc -n paint_ecocyc > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/gene_association.paint_ecocyc.gaf.gz | ./gaf2obo.pl -s Ecol -n paint_ecocyc > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_fb.gaf.gz: | ||
|
|
@@ -299,15 +291,15 @@ mirror/gene_association.paint_chicken.gaf.gz: | |
|
|
||
|
|
||
| target/neo-paint_goa_chicken.obo: mirror/gene_association.paint_chicken.gaf.gz | ||
| gzip -dc mirror/gene_association.paint_chicken.gaf.gz | ./gaf2obo.pl -s paint_goa_chicken -n paint_goa_chicken > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/gene_association.paint_chicken.gaf.gz | ./gaf2obo.pl -s Ggal -n paint_goa_chicken > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_human.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.pantherdb.org/downloads/paint/presubmission/gene_association.paint_human.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-paint_goa_human.obo: mirror/gene_association.paint_human.gaf.gz | ||
| gzip -dc mirror/gene_association.paint_human.gaf.gz | ./gaf2obo.pl -s paint_goa_human -n paint_goa_human > [email protected] && mv [email protected] $@ | ||
| gzip -dc mirror/gene_association.paint_human.gaf.gz | ./gaf2obo.pl -s Hsap -n paint_goa_human > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_mgi.gaf.gz: | ||
|
|
@@ -366,6 +358,14 @@ target/neo-paint_wb.obo: mirror/gene_association.paint_wb.gaf.gz | |
| gzip -dc mirror/gene_association.paint_wb.gaf.gz | ./gaf2obo.pl -s Cele -n paint_wb > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_xenbase.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.pantherdb.org/downloads/paint/presubmission/gene_association.paint_xenbase.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-paint_xenbase.obo: mirror/gene_association.paint_xenbase.gaf.gz | ||
| gzip -dc mirror/gene_association.paint_xenbase.gaf.gz | ./gaf2obo.pl -s Xenopus -n paint_xenbase > [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| mirror/gene_association.paint_zfin.gaf.gz: | ||
| wget --no-check-certificate ftp://ftp.pantherdb.org/downloads/paint/presubmission/gene_association.paint_zfin.gaf.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
@@ -407,7 +407,7 @@ target/neo-rgd.obo: mirror/gene_association.rgd.gz | |
|
|
||
|
|
||
| mirror/rnacentral.gpi.gz: | ||
| wget --no-check-certificate ftp://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/gpi/rnacentral.gpi.gz -O [email protected] && mv [email protected] $@ | ||
| wget --no-check-certificate https://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/gpi/rnacentral.gpi.gz -O [email protected] && mv [email protected] $@ | ||
|
|
||
|
|
||
| target/neo-rnacentral.obo: mirror/rnacentral.gpi.gz | ||
|
|
||