Bump org.obolibrary.robot:robot-core from 1.7.1 to 1.9.5

[dependabot]

Bumps org.obolibrary.robot:robot-core from 1.7.1 to 1.9.5.

Release notes

Sourced from org.obolibrary.robot:robot-core's releases.

v1.9.5

Added

• Updated ELK from 0.4.3 to 0.5.0. #999. This is an important change as ELK 0.5.0 is more complete than 0.4.3, which means that it will potentially uncover inferences, in particular unsatisfiable classes, which were not recognised by ELK 0.4.3.
• Add support for pluggable commands #1119

Changed

• Migrate to OWL API 4.5.26 to deal with broken turtle serialiser(ontodev/robot#1129). #1135
• Improvements to export and report for XLSX format #1148

v1.9.4

Changed

• Speed up unsatisfiable object-property check on certain reasoners including HermiT #1100
• Update HermiT from 1.3.8.413 to 1.4.5.456 #1073

Fixed

• Preserve prefixes across ontology load and save #1101

v1.9.3

Added

• Subset method added to extract #1000

Changed

• Upgrade OWLAPI to 4.5.25 #1093

Fixed

• Restore logging details for CLI #1091
• Fix OBO Serialiser bug where built in vocabulary was introduced as annotation properties #1089
• Fix OBO Serialiser erroneous logging #1088

v1.9.2

Changed

• Upgrade OWLAPI to 4.5.24 #1086

Fixed

• Downgrade SnakeYaml to 1.31 #1071
• Don't check for disjoint annotation properties #1084

This ROBOT release synchronizes with Protégé 5.6.0 which has updated to OWL API 4.5.24. This version of OWL API includes several changes to some serializers (notably the OBO-format serializer), which will likely result in large diffs when ontology files are saved with this version of ROBOT or Protégé for the first time. To minimize the annoyance caused by such diffs, it is advised to:

• save your ontology with ROBOT 1.9.2 or Protégé 5.6.0 without introducing any changes to the logic or annotations, and commit the resulting ontology files; consider saving to OFN syntax and then OWL (RDF/XML) format, as explained in #1090
• once the ontology files have been saved once with ROBOT 1.9.2 or Protégé 5.6.0, avoid editing it again with older versions of ROBOT or Protégé.

v1.9.1 with ELK 0.5.0

This version of ROBOT includes a snapshot of ELK 0.5.0, based on #999. ELK 0.5.0 is more strict than ELK 0.4.3 that was previously included with ROBOT, and so ROBOT may report more logical problems such as unsatisfiable classes when using the new ELK. This pre-release is for testing with ELK 0.5.0 in ROBOT workflows.

v1.9.1

Added

... (truncated)

Changelog

Sourced from org.obolibrary.robot:robot-core's changelog.

[1.9.5] - 2023-09-20

Added

• Updated ELK from 0.4.3 to 0.5.0. #999. This is an important change as ELK 0.5.0 is more complete than 0.4.3, which means that it will potentially uncover inferences, in particular unsatisfiable classes, which were not recognised by ELK 0.4.3.
• Add support for pluggable commands #1119

Changed

• Migrate to OWL API 4.5.26 to deal with broken turtle serialiser. #1135
• Improvements to export and report for XLSX format #1148

[1.9.4] - 2023-05-23

Changed

• Speed up unsatisfiable object-property check on certain reasoners including HermiT #1100
• Update HermiT from 1.3.8.413 to 1.4.5.456 #1073

Fixed

• Preserve prefixes across ontology load and save #1101

[1.9.3] - 2023-02-16

Added

• Subset method added to [extract] #1000

Changed

• Upgrade OWLAPI to 4.5.25 #1093

Fixed

• Restore logging details for CLI #1091
• Fix OBO Serialiser bug where built in vocabulary was introduced as annotation properties #1089
• Fix OBO Serialiser erroneous logging #1088

[1.9.2] - 2023-02-09

Changed

• Upgrade OWLAPI to 4.5.24 #1086

Fixed

• Downgrade SnakeYaml to 1.31 #1071
• Don't check for disjoint annotation properties #1084

[1.9.1] - 2022-10-28

Added

• [extract] and [merge] should optionally inject provenance #977
• Checking for empty strings in addition to missing ones in missing_label.rq #1017
• Add "domain" and "range" support to export #1061

Fixed

• Fixed report serialization in JSON #1016

... (truncated)

Commits

• 938263f Bump version to 1.10.0-SNAPSHOT
• 0ba0558 Bump version to 1.9.5
• d603d8d Update email step in release script
• 9a755b7 Fix minor JavaDoc problem
• 797cc73 Merge pull request #1135 from ontodev/owlapi4526
• 1e05594 Merge branch 'master' into owlapi4526
• fa04ed6 Merge pull request #1148 from dlutz2/export-cmd-bugfixes
• 07a2b59 Merge pull request #1147 from dlutz2/window-test-failures
• 87146ea Merge pull request #1142 from gouttegd/wip/simple-plugins-test
• 04585f2 Update plugins.md
• Additional commits viewable in compare view

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