Fix obsolete GO terms in test models. (#308)

geneontology · Mar 6, 2024 · f017aae · f017aae
1 parent 3bedb1e
commit f017aae
Show file tree

Hide file tree

Showing 33 changed files with 95 additions and 95 deletions.
diff --git a/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl b/test_ttl/go_cams/hold/Test009-has_output_GO_complex.ttl
@@ -198,7 +198,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000192/5d27d1cf00000204
 <http://model.geneontology.org/5d27d1cf00000192/5d27d1cf00000204> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl b/test_ttl/go_cams/hold/Test009b-has_output_complex.ttl
@@ -163,7 +163,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000211/5d27d1cf00000223
 <http://model.geneontology.org/5d27d1cf00000211/5d27d1cf00000223> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl b/test_ttl/go_cams/should_fail/Test001-bad-meta-no-contributor.ttl
@@ -166,8 +166,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -338,7 +338,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050
 <http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "148.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "55"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl b/test_ttl/go_cams/should_fail/Test002-enabled_by_GO_complex.ttl
@@ -176,8 +176,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -367,7 +367,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000056/5d27d1cf00000068
 <http://model.geneontology.org/5d27d1cf00000056/5d27d1cf00000068> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "447.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "32.999996185302734"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl b/test_ttl/go_cams/should_fail/Test003-occurs_in_MolecularEntity.ttl
@@ -176,8 +176,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -368,7 +368,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000078/5d27d1cf00000090
 <http://model.geneontology.org/5d27d1cf00000078/5d27d1cf00000090> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "218.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "21"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl b/test_ttl/go_cams/should_fail/Test004-occurs_in_GO_Complex.ttl
@@ -171,8 +171,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -367,7 +367,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000097/5d27d1cf00000109
 <http://model.geneontology.org/5d27d1cf00000097/5d27d1cf00000109> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl b/test_ttl/go_cams/should_fail/Test005-enabled_by_biological_process.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0006261> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -355,7 +355,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000116/5d27d1cf00000128
 <http://model.geneontology.org/5d27d1cf00000116/5d27d1cf00000128> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl b/test_ttl/go_cams/should_fail/Test006-occurs_in_BiologicalProcess.ttl
@@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0006261> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -368,7 +368,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000135/5d27d1cf00000147
 <http://model.geneontology.org/5d27d1cf00000135/5d27d1cf00000147> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "468.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl b/test_ttl/go_cams/should_fail/Test010-has_output-biological_process.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0006261> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000231/5d27d1cf00000243
 <http://model.geneontology.org/5d27d1cf00000231/5d27d1cf00000243> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl b/test_ttl/go_cams/should_fail/Test011-has_output-molecular_function.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000250/5d27d1cf00000262
 <http://model.geneontology.org/5d27d1cf00000250/5d27d1cf00000262> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "359.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "45"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl b/test_ttl/go_cams/should_fail/Test012-has_input-complex_GO_complex.ttl
@@ -169,8 +169,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -345,7 +345,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000269/5d27d1cf00000281
 <http://model.geneontology.org/5d27d1cf00000269/5d27d1cf00000281> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl b/test_ttl/go_cams/should_fail/Test012b-has_input-GoComplex.ttl
@@ -181,8 +181,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -252,7 +252,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000288/5d27d1cf00000293
 <http://model.geneontology.org/5d27d1cf00000288/5d27d1cf00000293> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl b/test_ttl/go_cams/should_fail/Test013-has_input-biological_process.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0006260> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -346,7 +346,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000311/5d27d1cf00000323
 <http://model.geneontology.org/5d27d1cf00000311/5d27d1cf00000323> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl b/test_ttl/go_cams/should_fail/Test014-has_input-molecular_function.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -345,7 +345,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000330/5d27d1cf00000342
 <http://model.geneontology.org/5d27d1cf00000330/5d27d1cf00000342> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl b/test_ttl/go_cams/should_fail/Test015-provides_direct_input_for-Biological_process.ttl
@@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0006261> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -381,7 +381,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000349/5d27d1cf00000361
 <http://model.geneontology.org/5d27d1cf00000349/5d27d1cf00000361> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "155"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "60"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl b/test_ttl/go_cams/should_fail/Test016-provides_direct_input_for-cellular_component.ttl
@@ -173,8 +173,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -443,7 +443,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000368/5d27d1cf00000384
 <http://model.geneontology.org/5d27d1cf00000368/5d27d1cf00000384> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "155"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "60"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,