[Google Form] New Recording Submission for Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C #5380
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teresa-m
changed the title
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Hi @mschatz, @Delphine-L, here is your PR. I will upload the video and provide the captions once they are ready. |
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@mschatz, @Delphine-L: I saw that your video is more of a lecture/ slides and not the Hands-on part. There is already a new recording of the hands-on. Should we keep the two separate, or do you want this included in the Hands-on tutorial? |
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We can link it to the long version of the tutorial I think : https://training.galaxyproject.org/training-material/topics/assembly/tutorials/vgp_genome_assembly/tutorial.html |
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If the video is a lecture, the ideal solution would be to add the slides to the GTN, and associate the video with those. Since time is short, and you might not have time to do that, we can include the video as a "custom" session in the event program, then add it to the GTN proper once you've had time to add the slides to the GTN If we link a video to the long tutorial, the video should cover all the steps of the tutorial, which it sounds like it doesn't do? |
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@mschatz and @Delphine-L: Here is the document for the captions to improve: https://docs.google.com/document/d/1GCa7q_VgW0sQbz-_9tFVuVyfgHNu0DCEnF8MI5tef5g/edit?usp=sharing |
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I think Delphine was working on a new video from the tutorial but Im not
100% sure what it covers. My goal was to set up the fundamental concepts,
algorithms, and data types for a successful genome assembly, and ends by
announcing the workflow in Galaxy. The recording went longer than I
expected but it should be fairly comprehensive.
Here are the slides I was working from:
https://docs.google.com/presentation/d/1yuaXSLU39pFNx8f6ruej_TCPq246JVLvUx9HsuQTsaE/edit?usp=sharing
Will work on the transcript
Thanks!
Mike
…On Mon, Sep 30, 2024 at 6:58 AM Saskia Hiltemann ***@***.***> wrote:
If the video is a lecture, the ideal solution would be to add the slides
to the GTN, and associate the video with those.
Since time is short, and you might not have time to do that, we can
include the video as a "custom" session in the event program, then add it
to the GTN proper once you've had time to add the slides to the GTN
If we link a video to the long tutorial, the video should cover all the
steps of the tutorial, which it sounds like it doesn't do?
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I finished editing the transcript. Let me know if you need anything else
Thanks!
Mike
…On Mon, Sep 30, 2024 at 10:14 AM teresa-m ***@***.***> wrote:
@mschatz <https://github.com/mschatz> and @Delphine-L
<https://github.com/Delphine-L>: Here is the document for the captions to
improve:
https://docs.google.com/document/d/1GCa7q_VgW0sQbz-_9tFVuVyfgHNu0DCEnF8MI5tef5g/edit?usp=sharing
Please ping me once you are done with them.
I will upload the corrected captions and close the PR (not merge!!).
It would be great if you could add the Slides after the GTA to the GTN.
Once you have done this you can submit the video again but this time link
the slide deck as training materials and the YouTube link as the link to
the video: https://youtu.be/9WZe7VGtr-k
Thanks so much for your work!
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@mschatz: Thanks a lot for your changes! They are added to the video. And I added your video to the Assembly program in this PR: #5384 |
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Thank you! Do you have a recommended tool to convert from google slides /
powerpoint / pdf to markdown?
Thanks!
Mike
…On Tue, Oct 1, 2024 at 4:53 AM teresa-m ***@***.***> wrote:
@mschatz <https://github.com/mschatz>: Thanks a lot for your changes!
They are added to the video. And I added your video to the Assembly program
in this PR: #5384
<#5384>
@Delphine-L <https://github.com/Delphine-L> and @mschatz
<https://github.com/mschatz>: I would close this PR, if that is ok for
you. If you find the time to convert the google slides to markdown and add
them to the tutorial we can link the video to the slide deck.
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@mschatz Helena wrote a script to convert pdf slides to GTN format, I am at a conference at the moment but will try to get this to you when I get a chance |
New recording submitted!
Submission Process checklist
CONTRIBUTORS.yamlfile