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trinity_align_and_estimate_abundance tool dependency issue #6298

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sanjaysrikakulam opened this issue Sep 4, 2024 · 0 comments
Open

trinity_align_and_estimate_abundance tool dependency issue #6298

sanjaysrikakulam opened this issue Sep 4, 2024 · 0 comments

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@sanjaysrikakulam
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A user sent a bug report for the tool toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.15.1+galaxy0

ERROR, cannot find bowtie-build in PATH setting: /usr/local/tools/_conda/envs/mulled-v1-1aa1bff6e22f91166b03460cbb21e9c1dc93fedfbe4be4dde72f7c5b840efd16/bin:/usr/local/tools/_conda/condabin:/opt/galaxy/venv/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin

ERROR, cannot find bowtie in PATH setting: /usr/local/tools/_conda/envs/mulled-v1-1aa1bff6e22f91166b03460cbb21e9c1dc93fedfbe4be4dde72f7c5b840efd16/bin:/usr/local/tools/_conda/condabin:/opt/galaxy/venv/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin

Please be sure the utilities samtools bowtie-build bowtie rsem-calculate-expression are available via your PATH setting.

The environment does not contain the bowtie* tools. Only bowtie2* is available.

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