Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Updating workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation from 0.4.2 to 0.4.3 #431

Open
wants to merge 1 commit into
base: main
Choose a base branch
from

Conversation

gxydevbot
Copy link
Contributor

Hello! This is an automated update of the following workflow: workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1

The workflow release number has been updated from 0.4.2 to 0.4.3.

@gxydevbot gxydevbot changed the title Updating workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation from 0.4.2 to 0.4.3 Updating workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation from 0.4.2 to 0.4.3 Sep 23, 2024
@gxydevbot
Copy link
Contributor Author

There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation branch from dff4639 to 3ce3d09 Compare September 23, 2024 14:43
@gxydevbot
Copy link
Contributor Author

There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the workflows/sars-cov-2-variant-calling/sars-cov-2-consensus-from-variation branch from 3ce3d09 to e6ea31b Compare September 24, 2024 14:20
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant