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@epnev epnev released this 05 Jul 21:54
v1.5
482b4a2
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Learn about vigilant mode.

This release requires the creation of a new environment due to some new dependencies.

New features include:

  • Support for Neurodata Without Borders (NWB) file format.
  • A GUI for manual inspection and modifications of the results.
  • Better support for scanbox (.sbx) files.
  • Ability to save results movies and exporting results analysis.
  • Ability to deconvolve traces directly within the Estimates objects (estimates.deconvolve)
  • Better exporting of the results in both online and batch processing modes.
  • Ability to apply all quality tests as a post-processing step during online processing.

On the backend:

  • Dropping of Keras as a dependency, since it was creating issues with windows installation. It can still be used to deploy the NN models if present. Deployment is done directly with Tensorflow.
  • A few additional tests for saving/loading objects.

Reproducibility note:
The metrics shown in the eLife paper for the online analysis may no longer be fully reproducible due to the new way of upsampling the results prior to saving them if downsampling was initially used. However, all the scripts still run and the results are the same.

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