nature_gentics_codes

Codes for analyzing ATAC-Seq, RNA-Seq, CUT&RUN, MPRA, Hi-C and HiChIP data

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
code		code
raw_data		raw_data
rules		rules
ATAC_pipeline.sh		ATAC_pipeline.sh
CUTRUN_pipeline.sh		CUTRUN_pipeline.sh
LICENSE		LICENSE
MPRA_package.R		MPRA_package.R
README.md		README.md
RNA-seq_DESeq2.R		RNA-seq_DESeq2.R
RNA-seq_TPM_Kallisto.bash		RNA-seq_TPM_Kallisto.bash
Snakefile		Snakefile
config.yml		config.yml
hg38.pair_header		hg38.pair_header
run_demo.sh		run_demo.sh

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