Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement interventions on model rates #91

Merged
merged 62 commits into from
Sep 19, 2023

Conversation

pratikunterwegs
Copy link
Collaborator

@pratikunterwegs pratikunterwegs commented Aug 21, 2023

This draft PR allows ODE models to include interventions on rate paramters. This:

  1. Fixes intervention alters transmissibility #43 by allowing modification of the transmission rate $\beta$ (now available in the default model);
  2. Fixes Add treatment #42 by editing the Vacamole model to allow modifying the hospitalisation rate $\eta$;
  3. Defines an <intervention> super-class that can accommodate both age-stratified interventions on social contacts as well as uniform interventions on model parameters; associated documentation to be added;
  4. Updates vignettes with new types of interventions;
  5. Adds a basic vignette "Modelling interventions on model rates" showing the new functionality of interventions on model rates.

pratikunterwegs and others added 30 commits August 18, 2023 17:00
@pratikunterwegs pratikunterwegs mentioned this pull request Aug 23, 2023
@pratikunterwegs pratikunterwegs marked this pull request as ready for review August 24, 2023 13:14
@pratikunterwegs pratikunterwegs self-assigned this Aug 24, 2023
@pratikunterwegs pratikunterwegs merged commit 3857e91 into main Sep 19, 2023
10 checks passed
@pratikunterwegs pratikunterwegs deleted the feature/rate-interventions branch September 19, 2023 11:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

intervention alters transmissibility Add treatment
3 participants