Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add intervention & restructure simulate_tree_from_pop() #97

Merged
merged 18 commits into from
Oct 2, 2023
Merged

Add intervention & restructure simulate_tree_from_pop() #97

merged 18 commits into from
Oct 2, 2023
+532 −98

Commits on Oct 2, 2023

  1. Add intervention function

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    23f4837 View commit details
    Browse the repository at this point in the history

  2. Incorporate intervention into simulation functions

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    07ce560 View commit details
    Browse the repository at this point in the history

  3. Add examples of intervention simulations

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    aecb439 View commit details
    Browse the repository at this point in the history

  4. Refactor to use do.call() with list of dot-dot-dot args

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    624339c View commit details
    Browse the repository at this point in the history

  5. Format example

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    a1925f4 View commit details
    Browse the repository at this point in the history

  6. Restructure to use dot-dot-dot to pass args to pois and binom

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    e3bb568 View commit details
    Browse the repository at this point in the history

  7. Linting

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    d361d0c View commit details
    Browse the repository at this point in the history

  8. Add tests of simulations with intervention

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    4aefef1 View commit details
    Browse the repository at this point in the history

  9. Add tests to cover nbinom offspring intervention case

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    d463154 View commit details
    Browse the repository at this point in the history

  10. Fixed some tests

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    bf87b63 View commit details
    Browse the repository at this point in the history

  11. Linting

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    95e9a6d View commit details
    Browse the repository at this point in the history

  12. Don't expose intervention function

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    36a5ed8 View commit details
    Browse the repository at this point in the history

  13. Rename R0_reduction argument to intvn_mean_reduction

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    bb76af5 View commit details
    Browse the repository at this point in the history

  14. Rename intvn_scale_R0() to intvn_reduce_mean()

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    f714034 View commit details
    Browse the repository at this point in the history

  15. Reword function title and description

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    b42e92b View commit details
    Browse the repository at this point in the history

  16. Reword details for clarity

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    0911d00 View commit details
    Browse the repository at this point in the history

  17. Add a reference

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    08edfb4 View commit details
    Browse the repository at this point in the history

  18. Reword intvn_mean_reduction parameter documentation

    @jamesmbaazam
    jamesmbaazam committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    036aa88 View commit details
    Browse the repository at this point in the history