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Full package review for epichains v0.1.0 release #122

Merged
merged 23 commits into from
Dec 15, 2023
Merged

Full package review for epichains v0.1.0 release #122

merged 23 commits into from
Dec 15, 2023

Commits on Dec 15, 2023

  1. Apply suggestions from code review 

    Co-authored-by: Hugo Gruson <[email protected]>
Co-authored-by: Adam Kucharski <[email protected]>
    @jamesmbaazam @Bisaloo @adamkucharski
    3 people committed Dec 15, 2023
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  2. Automatic readme update

    @actions-user @jamesmbaazam
    actions-user authored and jamesmbaazam committed Dec 15, 2023
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  3. Apply suggestions: Reword ... arg description 

    Co-authored-by: Hugo Gruson <[email protected]>
    @jamesmbaazam @Bisaloo
    jamesmbaazam and Bisaloo committed Dec 15, 2023
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  4. Clarify phrase about how generation_time can be specified 

    Co-authored-by: Hugo Gruson <[email protected]>
    @jamesmbaazam @Bisaloo
    jamesmbaazam and Bisaloo committed Dec 15, 2023
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  5. Remove sprintf call from stop() message 

    Co-authored-by: Hugo Gruson <[email protected]>
    @jamesmbaazam @Bisaloo
    jamesmbaazam and Bisaloo committed Dec 15, 2023
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  6. Remove redundant check

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  7. Generate documentation

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  8. Rename count variable and convert result to tibble

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  9. Remove unneccesary lambda from lapply

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  10. Label count column in raw data as cases.

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  11. Revert use of setdiff

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  12. Generate docs

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  13. Fix spelling and update wordlist. Fixes #144.

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  14. Linting

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  15. Fix test

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  16. Update snapshots

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  17. Remove unnecessary badges to fix #164

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  18. Delete CITATION file to fix #129

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  19. Use dev version

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  20. Clean up NEWS

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  21. Move truncdist to Imports to fix #138

    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  22. Remove unnecessary packages from Suggests and Remotes to close #126 and 

    close #127
    @jamesmbaazam
    jamesmbaazam committed Dec 15, 2023
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  23. Automatic readme update

    @actions-user
    actions-user committed Dec 15, 2023
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