Post cran check fixes (#816)

* fix typo in DOI * reduce plot size and name chunks * remove plots from unnamed chunks
epiforecasts · Oct 2, 2024 · 817ec56 · 817ec56
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diff --git a/R/dist_spec.R b/R/dist_spec.R
@@ -23,7 +23,7 @@
 #'   \doi{10.48550/arXiv.2405.08841}
 #' Park,  S. W.,  et al.,  "Estimating epidemiological delay distributions for
 #'   infectious diseases", *medRxiv*, 2024.
-#'   \doi{<https://doi.org/10.1101/2024.01.12.24301247}
+#'   \doi{https://doi.org/10.1101/2024.01.12.24301247}
 #'
 #' @param distribution A character string representing the distribution to be
 #'   used (one of "exp", "gamma", "lognormal", "normal" or "fixed")

diff --git a/man/discrete_pmf.Rd b/man/discrete_pmf.Rd
diff --git a/man/discretise.Rd b/man/discretise.Rd
diff --git a/vignettes/EpiNow2-unnamed-chunk-11-1.png b/vignettes/EpiNow2-unnamed-chunk-11-1.png
diff --git a/vignettes/EpiNow2-unnamed-chunk-12-1.png b/vignettes/EpiNow2-unnamed-chunk-12-1.png
diff --git a/vignettes/EpiNow2-unnamed-chunk-15-1.png b/vignettes/EpiNow2-unnamed-chunk-15-1.png
diff --git a/vignettes/EpiNow2-unnamed-chunk-16-1.png b/vignettes/EpiNow2-unnamed-chunk-16-1.png
diff --git a/vignettes/EpiNow2.Rmd.orig b/vignettes/EpiNow2.Rmd.orig
@@ -122,7 +122,7 @@ head(summary(estimates, output = "estimated_reported_cases"))
 
 A range of plots are returned (with the single summary plot shown below). These plots can also be generated using the following `plot` method.
 
-```{r, dpi = 330, fig.width = 12, fig.height = 12, message = FALSE, warning = FALSE}
+```{r plot_estimates, message = FALSE, warning = FALSE}
 plot(estimates)
 ```
 
@@ -165,6 +165,6 @@ knitr::kable(estimates$summary$summarised_results$table)
 
 A range of plots are again returned (with the single summary plot shown below).
 
-```{r, dpi = 330, fig.width = 12, fig.height = 12, message = FALSE, warning = FALSE}
+```{r plot_regional_epinow_summary, message = FALSE, warning = FALSE}
 estimates$summary$summary_plot
 ```