Allow mongodb host config #53
Workflow file for this run
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| # This workflow will build the project, lint, run tests, and build and push | |
| # Docker images. For more information see: | |
| # https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: build app | |
| on: | |
| push: | |
| branches: [dev] | |
| pull_request: | |
| branches: [dev] | |
| jobs: | |
| analyze_code: | |
| name: Static code analysis | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install requirements | |
| run: | | |
| pip install --upgrade pip==24.0 | |
| pip install -r requirements_dev.txt | |
| - name: Lint with flake8 | |
| run: flake8 | |
| - name: Static type checking with mypy | |
| run: mypy cloud_registry | |
| - name: Code formatting check with black | |
| run: black --check . | |
| test: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| env: | |
| PROBE_ENDPOINT: http://localhost:8080/ga4gh/registry/v1/ui/ | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install requirements | |
| run: | | |
| pip install --upgrade pip==24.0 | |
| pip install -r requirements.txt | |
| pip install -r requirements_dev.txt | |
| pip install -e . | |
| - name: Calculate unit test coverage | |
| run: | | |
| coverage run --source cloud_registry -m pytest -W ignore::DeprecationWarning | |
| coverage xml | |
| - name: Submit Report to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| - name: Start app | |
| run: docker-compose up -d --build | |
| - name: Wait until app is up | |
| run: sleep 30 | |
| - name: Run health check | |
| run: | | |
| echo "${PROBE_ENDPOINT}" | |
| test $( \ | |
| curl \ | |
| -sL \ | |
| -v \ | |
| -o /dev/null \ | |
| -w '%{http_code}' \ | |
| -X GET \ | |
| --header 'Accept: application/json' \ | |
| "${PROBE_ENDPOINT}" \ | |
| ) == '200' || exit 1 | |
| publish: | |
| name: Build and publish app image | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'push' }} | |
| needs: [analyze_code, test] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Generate tag | |
| run: | | |
| echo "TAG=$(date '+%Y%m%d')" >> $GITHUB_ENV | |
| - name: Build and publish image | |
| id: docker | |
| uses: philips-software/[email protected] | |
| with: | |
| dockerfile: . | |
| image-name: "cloud-registry" | |
| tags: "latest ${{ env.TAG }}" | |
| push-branches: "${{ github.event.repository.default_branch }}" | |
| env: | |
| REGISTRY_USERNAME: ${{ secrets.DOCKERHUB_LOGIN }} | |
| REGISTRY_TOKEN: "${{ secrets.DOCKERHUB_TOKEN }}" | |
| DOCKER_ORGANIZATION: ${{ secrets.DOCKERHUB_ORG }} | |
| GITHUB_ORGANIZATION: ${{ github.repository_owner }} | |
| - name: Verify that image was pushed | |
| run: | | |
| echo "Push indicator: ${{ steps.docker.outputs.push-indicator }}" | |
| echo "# Set to 'true' if image was pushed, empty string otherwise" | |
| test "${{ steps.docker.outputs.push-indicator }}" == "true" |